Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq365 149 7e-31 seq33 86.0 7e-12 seq1 82.4 9e-11 >seq365 Length=14695327 Score = 149 bits (164), Expect = 7e-31 Identities = 392/588 (67%), Gaps = 8/588 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||||||||||| || ||||||| | || || |||||||| || || | | Sbjct 6186172 CACGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAT 6186113 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||| || ||||| || |||||||| || || || ||| | | | || || ||||| Sbjct 6186112 CCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATCGA-GCAGAAGCTACCGGAGAAGAA 6186054 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCT-CCATAACCGGCGCTGTCATGTA 24312 || ||||| || || || || | | || ||| | | | | | | | | | | Sbjct 6186053 GATACCTTCGACGCAGGCGAAAGCGACGATTCGCTCTGCGAAAGTCTGAGAT-CCGTCGA 6185995 Query 24313 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 24372 ||||| | ||||| | || ||||| || ||||| || || || || || | Sbjct 6185994 TCCACGTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGGA 6185935 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 |||||| || | | || || | || || | || || || | | ||||| ||||| | Sbjct 6185934 AGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTACGTGTCGAGGAGGAGACTGTACATCT 6185875 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 |||| || || || ||||| || || || || ||||||||| | ||||| | | | Sbjct 6185874 CCGAGTGGATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTT 6185815 Query 24493 GTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 | || || ||| ||||| || | ||| || || |||||||| ||| || Sbjct 6185814 GGACATC-GGACATGAATCGGGAAGCGAGATTCTCTAGGACGATTCCGTCTGAGGCGGCG 6185756 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATC 24610 || || || | || ||||| || || | | ||| | | || | || || | ||| || Sbjct 6185755 AAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGT-TGAGATTCTCCCAGTC 6185697 Query 24611 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 24670 |||| |||| ||| ||||||||| | ||||| || |||||||| ||||| || Sbjct 6185696 GCGACCGTCTTGTGATAGATCGACTTCTTCCGCCGTCCAGAACGATGCCTCGGCCTTCTT 6185637 Query 24671 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 ||||| | |||||| | | |||||||| ||||| ||| ||||| Sbjct 6185636 GTACATCTCCCAGATCTGTGGGTATTGAATCGGAAACATACAGAATCT 6185589 >seq33 Length=9343251 Score = 86.0 bits (94), Expect = 7e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||||| || || | |||||||| || || || |||||| | ||| | || || Sbjct 5836781 AGTTCCCGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 5836840 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || | || || ||||| ||||| | ||| ||||| || || | || | ||| | Sbjct 5836841 GTAAGTTTGTATTGCGGAGTCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATCA 5836899 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 |||||||||||| |||||||| | ||| | | ||| | | ||| ||| | || | Sbjct 5836900 GCATGTGCTGAGGCCTTTCAACCACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCAA 5836959 Query 54603 AAGTTTTAAAACCAAAATAGT 54623 |||||| || ||||| |||| Sbjct 5836960 GAGTTTTGAATCCAAAGTAGT 5836980 >seq1 Length=21755756 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||||| ||| || | |||||||| || || || |||||| | ||| | || || Sbjct 437552 AGTTCCCGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 437493 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || | || || || || ||||| | ||| ||||| || || | || | ||| | Sbjct 437492 GTAAGTTTGTATTGCGGATTCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATCA 437434 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 |||||||||||| || ||||| | ||| | | ||| | | ||| ||| | || | Sbjct 437433 GCATGTGCTGAGGCCTCTCAACTACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAA 437374 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||| || ||||| |||| ||| || || || || || || || Sbjct 437373 GAGTTTTGAATCCAAAGTAGTCATATTCGAAATCGCGATCATAGATGAT 437325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716865070240