Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq154 113 4e-20 seq72 100 2e-16 seq98 91.5 1e-13 seq426 89.7 4e-13 >seq154 Length=17905225 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| |||| || | |||||||||||| |||||||| || || ||| Sbjct 1925412 CCACCACGGAGCCTGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGCC 1925471 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | ||||| ||||| || || || | || || | |||||||||| || Sbjct 1925472 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 1925531 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | | ||| ||||| | ||| Sbjct 1925532 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTATCGGAGCTCTCAACC 1925591 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||||||||| | || || ||||| || ||||| Sbjct 1925592 TCCAGTGTGATTGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCAT 1925638 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || || || || || |||| ||| | | ||||| ||||| ||||| Sbjct 1925670 GTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGACCATCCTCAAGCTGCTTGCCG 1925729 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || | |||||||||||| ||| | ||||||||||| || || |||| Sbjct 1925730 GCGAAGATCAACCTCTGCTGGTCCGGGGGGATACCTTCCTTGTCTTGAATTTTGGCTTTC 1925789 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || ||| | ||| |||| ||||||||||| ||||| || ||| Sbjct 1925790 ACGTTGTCGATGGTGTCAGAGCTCTCAACCTCCAAAGTAATGGTCTTTCCGGTCAAAGTT 1925849 Query 21159 TTGACAAATATTTGCAT 21175 || || || |||||||| Sbjct 1925850 TTCACGAAGATTTGCAT 1925866 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || |||||||| |||||||| || || ||| Sbjct 1938678 CCACCACGAAGACGGAGGACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAATCGGCC 1938737 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||| ||||| || || || | || || | |||||| || ||| Sbjct 1938738 AATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGGGGG 1938797 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||||| | | | | ||| ||| | ||| | Sbjct 1938798 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACT 1938857 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||||||||| | || || ||||| |||||||| Sbjct 1938858 TCAAGGGTGATTGTCTTGCCGGTGAGAGTCTTCACAAAGATTTGCAT 1938904 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||||||||| | ||| | || |||||||| || ||||| |||||||| Sbjct 1925868 CCACCACGGAGCCTGAGCACTAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCA 1925927 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||| || || || | || | ||||||||||| || Sbjct 1925928 AGAGTACGGCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGG 1925987 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | ||| || ||| ||| Sbjct 1925988 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCAGAACTCTCGACC 1926047 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||| || |||| |||||||| || || ||||| Sbjct 1926048 TCCAAAGTGATCGTCTTTCCCGTTAGGGTTTTGACGAAGATCTGCAT 1926094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||||||||| | ||| | || |||||||| || ||||| |||||||| Sbjct 1939134 CCACCACGGAGCCTGAGCACTAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCA 1939193 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||| || || || | || | ||||||||||| || Sbjct 1939194 AGAGTACGGCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGG 1939253 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | ||| || ||| ||| Sbjct 1939254 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCAGAACTCTCGACC 1939313 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||| || |||| |||||||| || || ||||| Sbjct 1939314 TCCAAAGTGATCGTCTTTCCCGTTAGGGTTTTGACGAAGATCTGCAT 1939360 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| |||| || | ||||| ||||| || ||||| || || ||| Sbjct 1926096 CCACCACGGAGCCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 1926155 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || |||| |||| ||| || || || | ||||| |||||||| ||| || Sbjct 1926156 AAAGTCCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 1926215 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||| || ||| || | ||| || ||| | ||| Sbjct 1926216 ATTCCTTCCTTATCCTGGATTTTGGCTTTAACGTTATCGATGGTGTCAGAGCTTTCCACC 1926275 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||||||||| | || || ||||| || ||||| Sbjct 1926276 TCGAGGGTGATAGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 1926322 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| |||| || | ||||| ||||| || ||||| || || ||| Sbjct 1939362 CCACCACGGAGCCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 1939421 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || |||| |||| ||| || || || | ||||| |||||||| ||| || Sbjct 1939422 AAAGTCCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 1939481 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||| || ||| || | ||| || ||| | ||| Sbjct 1939482 ATTCCTTCCTTATCCTGGATTTTGGCTTTAACGTTATCGATGGTGTCAGAGCTTTCCACC 1939541 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||||||||| | || || ||||| || ||||| Sbjct 1939542 TCGAGGGTGATAGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 1939588 >seq72 Length=2765197 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | ||| | || |||||||| || ||||| ||||| || Sbjct 415983 CCACCACGAAGACGGAGCACGAGATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGCG 416042 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||| ||||||||||| || || | || | || |||||||||| || Sbjct 416043 AGTGTGCGCCCGTCTTCCAGCTGTTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGG 416102 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| |||||| | | ||| || || | || Sbjct 416103 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATGGTGTCTGACGATTCGACC 416162 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| || ||||| || |||| ||||| ||||| || ||||| || Sbjct 416163 TCAAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATCTT 416212 >seq98 Length=1871237 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| || ||||| ||||| || ||||| | ||||||| ||||| || || Sbjct 1506708 GTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCG 1506649 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || | || |||||||||| || | ||||||||||| |||||| || Sbjct 1506648 GCGAAGATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 1506589 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| ||||| || ||| || | ||| || ||||| || |||| ||| Sbjct 1506588 ACATTGTCGATCGTATCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTT 1506529 Query 21159 TTGACAAATATTTGCATTTT 21178 || || || || |||||||| Sbjct 1506528 TTCACGAAGATCTGCATTTT 1506509 >seq426 Length=14042796 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || |||||||| |||||||| || || || Sbjct 4567095 CCACCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCA 4567154 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||| || || || | || || | |||||||||| || Sbjct 4567155 AGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 4567214 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | | || ||| | |||| Sbjct 4567215 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACC 4567274 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| ||||| ||||| | || || ||||| || ||||| Sbjct 4567275 TCGAGGGTAATTGTCTTTCCGGTGAGTGTCTTCACAAAGATCTGCAT 4567321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422255916670808