Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq9 100 2e-16 >seq9 Length=11574597 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 |||||||| || | | || ||||| || |||||||| | |||| || || || | | Sbjct 3600001 TGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACACGTGAGCTAGC 3599942 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 || ||||| | ||||| ||| |||||||||||| ||||| || || ||||| || || Sbjct 3599941 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATGTCCGCA 3599882 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 || | ||||| | ||||| || |||| ||| || |||||| ||||| Sbjct 3599881 GAACGCTGATACATTTGACATGAGAGCTCTCCTTCTGCCACATAGAACTG 3599832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 97090 TGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAA 97149 || ||||| || |||||||| | ||| || || |||| ||| |||| | ||||| Sbjct 3606688 TGGATAAAATCACCAGGAACAAGATCGCACACGTGAGCGAGCATGAAAGTAAGAAGAGAG 3606629 Query 97150 TAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGA 97209 ||| |||||||||||| ||||| || || ||||| || || || | ||||| | ||| Sbjct 3606628 TAGGAAGCAATGTTAAATGGCACACCAAGGCCCATGTCTGCAGAACGCTGATACATTTGA 3606569 Query 97210 CAGGAAAGCTTTCCATCACACACATAAAACTG 97241 || || |||| ||| || |||||| ||||| Sbjct 3606568 CATGAGAGCTCTCCTTCTGCCACATAGAACTG 3606537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346781303537660