Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq25 140 5e-28 seq33 116 6e-21 seq154 104 4e-17 seq2 98.7 2e-15 seq300 95.1 2e-14 seq426 86.0 9e-12 seq1 86.0 9e-12 >seq25 Length=9441222 Score = 140 bits (154), Expect = 5e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 |||||||| ||| ||||||| || || ||||| || ||||| | ||| ||||| || | Sbjct 6393803 ATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACCATAACCCTTGAGGTTGAAAGCTCA 6393862 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || | ||| ||| | || || || ||||||||||||||||| || ||||| || Sbjct 6393863 -GACATCATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGTATTCCTCCTGACCA 6393921 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| ||||||||||| || || || | |||||| | || || | | ||||| | Sbjct 6393922 GCAAAGACTTATTTTTGCCGGGAAGCAGCTCGAGGATGGCCGTACTCTGGCTGATTACAG 6393981 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| |||||||| |||||| | || |||||| | | ||| |||||||||| Sbjct 6393982 TATCCAAAAAGAGTCAACTCTCCACTTGGTTCTCAGGTTAAGAGGTGGTAT 6394032 Score = 116 bits (128), Expect = 6e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| ||||| | ||||| || || || ||||| || || |||| |||| ||| | Sbjct 6394031 ATGCAGATATTCGTCAAGACTCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 6394090 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || ||||||||||| |||||||| || | ||| || || Sbjct 6394091 -GACACCATTGACAATGTGAAGGCAAAAATTCAAGACAAAGAAGGGATCCAACCGGACCA 6394149 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | |||||| |||| || |||| || || || Sbjct 6394150 GCAGAGGCTAATCTTTGCCGGGAAGCAGCTCGAGGATGGTCGGACTTTAGCTGACTACAA 6394209 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| ||||| |||||| | || | ||| ||||| | || ||||| Sbjct 6394210 CATTCAGAAAGAGTCAACTCTTCACCTTGTTCTACGTCTCCGCGGTGG 6394257 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 |||||||| | |||||| || || ||||| ||||| | || ||||| || | Sbjct 6393575 ATGCAAATCTACGCAAAGACTCTTCAAGAAAAAACCATAACCCTTGACGTTGAAAGCTCA 6393634 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | || || || || || |||||||| || || | || || Sbjct 6393635 -GACACAATCGATAAAGTCAAGGCAAAGATACAGGAGAAAGAAGGAATTCCTCTGGACCA 6393693 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||| || ||| | || ||||| |||||||| | || || || | ||||| | Sbjct 6393694 ACAAAGGCTCATCTTTTCCGGTAAACAGCTAGAGGATGGCCGTACTTTGGCTGATTACGA 6393753 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| |||| ||| || || | || |||||| | | || |||||||||| Sbjct 6393754 TATCCAAAGAGAGTCTACCCTCCACTTGGTTCTCAGGTTGAGAGGTGGTAT 6393804 >seq33 Length=9343251 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || ||| ||||||| || || ||||| || |||||| | ||| | ||| || | Sbjct 3270698 ATGCAGATCTTTGTAAAGACTCTTACTGGCAAGACCATAACTCTTGAGGTCGAAAGCTCA 3270639 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 | ||| || ||| | || || || || || |||||||| || | ||||| || Sbjct 3270638 A-ACACAGTTGACAATGTCAAGGCTAAGATCCAGGACAAAGAAGGAATCACTCCTGACCA 3270580 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| ||||||||||| || |||||| | || ||| |||| || || | ||||| || Sbjct 3270579 GCAAAGACTTATTTTTGCCGGTAAACAACTCGAAGATGGTCGTACTTTGGCTGATTACAA 3270520 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| || |||||| | || | || | ||||| || ||||| || Sbjct 3270519 TATCCAAAAGGAGTCAACTCTTCACCTTGTCCTTCGTTTGCGCGGTGGAAT 3270469 >seq154 Length=17905225 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || || | || || ||||| || ||| | ||| | || ||| Sbjct 1939132 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAGGTCGAGAGCTC- 1939074 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || || | ||| ||||||||||| || |||||||| ||||| || || Sbjct 1939073 TGACACCATCGACAACGTGAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACCGGACCA 1939014 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || || || || || || | |||||| | || || || | ||||| || Sbjct 1939013 GCAAAGGTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCTTGGCCGATTACAA 1938954 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || ||||| | || |||||||| ||| | || |||||||| Sbjct 1938953 TATCCAGAAGGAGTCAACACTTCACTTGGTTTTGCGTCTTCGTGGTGGTAT 1938903 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || || | || || || || || ||| | ||| |||| ||| Sbjct 1925866 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAGACCATTACTTTGGAGGTTGAGAGCTC- 1925808 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || || | ||| ||||||||||| || |||||||| || || || || Sbjct 1925807 TGACACCATCGACAACGTGAAAGCCAAAATTCAAGACAAGGAAGGTATCCCCCCGGACCA 1925748 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || || || || || || | |||||| |||| || || | ||||| || Sbjct 1925747 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACAA 1925688 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || ||||| | || ||||| || ||| | || |||||||| Sbjct 1925687 TATCCAGAAGGAGTCAACACTTCACTTGGTCTTGCGTCTTCGTGGTGGTAT 1925637 >seq2 Length=11923138 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||||||||||||||||||||| |||||||| || ||||| || || ||| | Sbjct 8290337 CAGGACAAAGAAGGTATACCACCTGATCAGCAAAGGCTGATATTTGCCGGTAAGCAACTG 8290396 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | |||| ||| ||||| || || || ||||| || ||| | ||| |||| Sbjct 8290397 GAAGATGGAAGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTG 8290456 Query 124749 TTACGTTTACGAGGTGG 124765 ||| | | ||||||| Sbjct 8290457 TTAAGGCTCAGAGGTGG 8290473 >seq300 Length=15655920 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 124625 AATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACA 124684 ||| || || ||||| || ||||||||||||||||| || || || ||||| || ||||| Sbjct 3598484 AATACAGGACAAAGAGGGGATACCACCTGATCAACAGAGACTGATATTTGCTGGGAAACA 3598543 Query 124685 ATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTT 124744 | | || ||| | |||||| ||| || || || || || ||||| || ||| | || || Sbjct 3598544 ACTTGAAGATGGACGAACACTAGCGGACTACAACATCCAGAAAGAGTCGACTCTTCACTT 3598603 Query 124745 GGT-TTTACGTTTACGAGGTGGTA 124767 ||| || | | ||| | ||||||| Sbjct 3598604 GGTCTTGAGGCTTA-GGGGTGGTA 3598626 >seq426 Length=14042796 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || ||||| || | ||| | ||| Sbjct 4568461 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 4568402 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| ||||| || || ||||| ||||| || || || ||||| ||||| Sbjct 4568401 GACACGATCGATAACGTTAAAGCA-AAGATTCAGGATAAGGAGGGAATCCCACCGGATCA 4568343 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| || || ||||| || | || ||| | || || || | ||||| || Sbjct 4568342 GCAAAGGCTTATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGGACCTTGGCCGATTACAA 4568283 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | || ||||| | | | || |||||||| Sbjct 4568282 CATCCAGAAGGAATCCACCCTCCACTTGGTCCTCAGGCTCCGTGGTGGTAT 4568232 >seq1 Length=21755756 Score = 86.0 bits (94), Expect = 9e-12 Identities = 170/248 (69%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542 |||| |||||||||||||| | |||||| || ||||| | |||||||||||||||| | Sbjct 2317287 GCAATGTTAAATGGTACACCAAGACCCATGTCGGCTGAGCGCTGATACATTTGACATGAA 2317228 Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA 205602 || | | ||| | || | |||||| |||| || || || || | |||| Sbjct 2317227 AGTTCTCCATTTGCA---ACGTAGAATTGTGCAAACATGTGGCATGGAGGAAGTGCCATC 2317171 Query 205603 TTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTC-TAGAT--TCAGGttta 205659 | || |||| ||||||||| |||| | |||||| | | | ||| ||||| || Sbjct 2317170 AGCTTAAGATCTGGAGGATTCCAAGCTG---ACATTATAATCCGTCGATCATCAGGATTG 2317114 Query 205660 ttttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTA 205719 || || || || || || | || | |||||||||||||| ||||||| | | Sbjct 2317113 TTCTTGATCTTGTTGATTACATCCAACAGCTGATCAAATCCTTGCCCGGTATAATCAGCA 2317054 Query 205720 TCCATATC 205727 | |||||| Sbjct 2317053 TGCATATC 2317046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755449975238400