Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq426 109 6e-19 seq154 107 2e-18 seq98 100 3e-16 seq300 98.7 1e-15 seq72 98.7 1e-15 seq33 87.8 2e-12 >seq426 Length=14042796 Score = 109 bits (120), Expect = 6e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||||||||| || || || | || || |||||||| |||||||| Sbjct 4567130 CTCCTTCTGAATGTTGTAATCAGCAAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 4567189 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||| ||| || |||| ||| Sbjct 4567190 GATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 4567248 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| ||||| |||| || || || || || || || |||| Sbjct 4567249 TGTCAATGGTGTCAGAGCTC---TCCACCTCGAGGGTAATTGTCTTTCCGGTGAGTGTCT 4567305 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 4567306 TCACAAAGATCTGCAT 4567321 Score = 102 bits (112), Expect = 9e-17 Identities = 159/221 (72%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||||||||| | || |||||| |||||||||||||| |||| || || | Sbjct 4567562 ACGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCTGCCAAGGTACGACC 4567621 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | | ||||||||| | || | || ||||| Sbjct 4567622 ATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTT 4567681 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACC 43142 ||| ||| | || | |||| ||| | | | ||||| ||| ||| || |||| Sbjct 4567682 ATCC-TGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCT---TTCAACCTCGAGG 4567736 Query 43143 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || || ||||| || ||||| ||||| Sbjct 4567737 GTAATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 4567777 >seq154 Length=17905225 Score = 107 bits (118), Expect = 2e-18 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| ||||| |||||||| |||| || || | || || Sbjct 1938696 ACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGACCATCCTCA 1938755 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| ||||| |||||||| || | || | || ||||||||| | Sbjct 1938756 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGG 1938815 Query 43095 ATTTTTTGTTTGAGCGTCGCCACC-GTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 || || || | ||| | || ||||| |||| || || || | ||||| || Sbjct 1938816 ATCTTGGCCTTCA-CGTTGTCAATAGTGTCAGAGCTC---TCGACTTCAAGGGTGATTGT 1938871 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || ||||| |||||||||||||| Sbjct 1938872 CTTGCCGGTGAGAGTCTTCACAAAGATTTGCAT 1938904 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| ||||| |||||||| |||| || || | || || Sbjct 1925430 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGACCATCCTCA 1925489 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| ||||| ||||||||||| | || | | ||||||||| | Sbjct 1925490 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 1925549 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 || || || | ||| | | | || || |||| || || || | ||||| || Sbjct 1925550 ATCTTGGCCTTCA-CGTTGTCGATGGTATCGGAGCTC---TCAACCTCCAGTGTGATTGT 1925605 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || ||||| |||||||| ||||| Sbjct 1925606 CTTGCCGGTAAGAGTCTTCACAAAGATCTGCAT 1925638 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| ||||| || | ||| |||||| || ||||||||||| |||| || || | Sbjct 1938917 ACGCAAAACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCC 1938976 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | | |||||||| | || | | ||||| Sbjct 1938977 ATCCTCAAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATACCTTCCTT 1939036 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 || | ||| |||| | || ||| | | | ||||| |||| || || || | | Sbjct 1939037 GT-CTTGAATTTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTC---TCGACCTCCAAAG 1939092 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||||| || || | || || || ||||||||||| Sbjct 1939093 TGATGGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 1939132 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| ||||| || | ||| |||||| || ||||||||||| |||| || || | Sbjct 1925651 ACGCAAGACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGACC 1925710 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | | ||||||||| | || | | ||||| Sbjct 1925711 ATCCTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATACCTTCCTT 1925770 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 || | ||| |||| | || ||| | | | ||||| |||| || || || | | Sbjct 1925771 GT-CTTGAATTTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTC---TCAACCTCCAAAG 1925826 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || || | || || || ||||||||||| Sbjct 1925827 TAATGGTCTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 1925866 >seq98 Length=1871237 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 1506702 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAG 1506643 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||||||| | || | | ||||||||| ||| || |||| | Sbjct 1506642 ATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 1506583 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||| ||| || || || |||| ||||| || || |||||||| || || || Sbjct 1506582 TCGATCGTATCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACG 1506523 Query 43173 AAGATTTGCATTTTT 43187 ||||| ||||||||| Sbjct 1506522 AAGATCTGCATTTTT 1506508 >seq300 Length=15655920 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | ||| | ||||| || | || ||||| || || |||||||| || Sbjct 7117908 TCCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGC 7117967 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| |||| | |||| || | ||||| || ||||| || ||||||||||| || | ||| Sbjct 7117968 CAGTGTCCTCCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGG 7118027 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| || || | | | | ||| || ||||| || Sbjct 7118028 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTATCCGATGATTCAAC 7118087 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || | || || || || |||||||| || || || || || ||||||||| Sbjct 7118088 CTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTTT 7118139 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 8532563 AAAAGTTTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 8532622 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 8532623 TTACCACTATACTAC 8532637 >seq72 Length=2765197 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || ||| |||| || ||||| || || ||||| Sbjct 416018 CTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCCGTCTTCCAGCTGTTTTCCGGCGAA 416077 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||| | |||||||||||| | || | | |||||||| ||| || ||| | | Sbjct 416078 TATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATT 416137 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| |||||| || || | || || || || |||||||| || || || Sbjct 416138 GTCGATGGTGTCTGACGATTCGACCTCAAGGGTTATTGTCTTCCCCGTTAGGGTTTTCAC 416197 Query 43172 AAAGATTTGCATTTTTACG 43190 |||||| ||||| ||| || Sbjct 416198 AAAGATCTGCATCTTTGCG 416216 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||||| | || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 1262994 AAAAATTTACGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 1262935 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 1262934 TTACCACTATACTAC 1262920 >seq33 Length=9343251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| |||||||||||||||| ||| || | || || || || ||||| || || Sbjct 3270507 CTCCTTTTGGATATTGTAATCAGCCAAAGTACGACCATCTTCGAGTTGTTTACCGGCAAA 3270566 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||| |||||||| | | | | || |||||| ||| || |||| | Sbjct 3270567 AATAAGTCTTTGCTGGTCAGGAGTGATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATT 3270626 Query 43112 CGCCACCGTGT---CGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | || |||| ||| ||| || || | || ||||| ||||| || || ||||| Sbjct 3270627 GTCAACTGTGTTTGAGCT---TTCGACCTCAAGAGTTATGGTCTTGCCAGTAAGAGTCTT 3270683 Query 43169 TACAAAGATTTGCAT 43183 ||||||||| ||||| Sbjct 3270684 TACAAAGATCTGCAT 3270698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813039754640