Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2 100 4e-16 seq25 89.7 8e-13 >seq2 Length=11923138 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||||||||| || ||||| |||| ||| | |||||| ||||| || || ||||| Sbjct 8290476 GTTCCACCTCTGAGCCTTAACACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCC 8290417 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || ||||| | ||| || | ||| || || ||||| |||| ||||||||||| || Sbjct 8290416 GCTAGGGTTCTTCCATCTTCCAGTTGCTTACCGGCAAATATCAGCCTTTGCTGATCAGGT 8290357 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 8290356 GGTATACCTTCTTTGTCCTG 8290337 >seq25 Length=9441222 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | ||||| || | ||| || ||||| ||| | ||||| | Sbjct 6394029 CCACCTCTTAACCTGAGAACCAAGTGGAGAGTTGACTCTTTTTGGATACTGTAATCAGCC 6393970 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || | || || || |||||||| | ||||||||| || |||||| Sbjct 6393969 AGAGTACGGCCATCCTCGAGCTGCTTCCCGGCAAAAATAAGTCTTTGCTGGTCAGGAGGA 6393910 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 6393909 ATACCTTCTTTATCTTG 6393893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743520470376960