Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq154 109 4e-19 seq98 98.7 6e-16 seq72 98.7 6e-16 seq426 93.3 3e-14 >seq154 Length=17905225 Score = 109 bits (120), Expect = 4e-19 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | ||| || ||||| |||||||| |||| | Sbjct 1925412 CCACCACGGAGCCTGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGCC 1925471 Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACG 34279 | | || || | || || | |||||| || ||||| ||||| ||||||||||| || | Sbjct 1925472 AAGGTG-CGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 1925530 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | || || |||||||| ||||| ||| | | | | || | ||||| || Sbjct 1925531 GATAC-CT-TCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTATCGGAGCTCTCA 1925588 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||| || |||||||| ||||| ||||||||||||||||| Sbjct 1925589 ACCTCCAGTGTGATTGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCAT 1925638 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| |||| || || | || || | |||||| || ||||| Sbjct 1938714 TCCTTCTGAATGTTGTAATCGGCCAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAG 1938773 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||| || ||| | || |||||||| ||||| ||| | | | Sbjct 1938774 ATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTG 1938833 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | ||||| || | ||||| || |||||||||||||| |||||| Sbjct 1938834 TCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATTGTCTTGCCGGTGAGAGTCTTCACA 1938893 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 1938894 AAGATTTGCAT 1938904 >seq98 Length=1871237 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || || |||| || | |||||| || ||||| Sbjct 1506703 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAA 1506644 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | ||||||||||| || | | |||||||| ||||| ||| | || Sbjct 1506643 GATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 1506584 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| ||||| || ||||| || | ||||| || || || || || |||||||| Sbjct 1506583 GTCGATCGTATCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 1506524 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 1506523 GAAGATCTGCAT 1506512 >seq72 Length=2765197 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||||||||||||||||| || || |||| |||| ||| || || ||||| Sbjct 416019 TCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCCGTCTTCCAGCTGTTTTCCGGCGAAT 416078 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | ||||||||||| || | | |||||||| ||| || ||||| | || Sbjct 416079 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATC-TTCGCTTTCACATT 416137 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | ||||||||| || | || || || || || || || |||||||| Sbjct 416138 GTCGATGGTGTCTGACGATTCGACCTCAAGGGTTATTGTCTTCCCCGTTAGGGTTTTCAC 416197 Query 34378 AAAGATCTGCATC 34390 ||||||||||||| Sbjct 416198 AAAGATCTGCATC 416210 >seq426 Length=14042796 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || ||| ||||| |||||||| |||| | Sbjct 4568235 CCACCACGGAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 4568294 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || |||| |||||| || ||||| || |||| ||||| || || Sbjct 4568295 AAGGTCCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGTGGG 4568354 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG----ATCGGCTATCGAATCGGTCGATTC 34338 | | |||||| || |||||| |||||| |||| |||| |||| ||| Sbjct 4568355 ATTCCCTCCTTATCCTGAATCTTT-GCTTTAACGTTATCG---ATCGTGTCGGAGCTTTC 4568410 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || | ||||| || || ||||||||||| || || |||||||||||| Sbjct 4568411 CACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 4568462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069487913280