Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq33 86.0 1e-11 >seq33 Length=9343251 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| ||||| || | ||||| |||||||| || |||| ||| || ||| | ||| | Sbjct 5836993 GATTTCGAGTATGACTACTTTGGATTCAAAACTCTTGAGAGATCATACCTCTTAAAAGTC 5836934 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | ||||| | || ||| | |||||||||| ||||| | || |||| || |||||| Sbjct 5836933 CAAGGCAAAGTGGTTGAAAGGCCTCAGCACATGCTGATGAGGGTTTCTGTTGGCATTCAC 5836874 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 ||||| || || || || | | || ||| |||| | | || ||| | || Sbjct 5836873 AAGGAAGATATTGACTCCGCAATACAAACTTACCATTTAATGTCTCAGCGATGGTTCACT 5836814 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || ||||||||| | || || Sbjct 5836813 CATGCATCTCCTACTCTCTTCAACTCGGGAAC 5836782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073757622630784