Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq154 120 2e-22 seq426 111 1e-19 seq72 111 1e-19 >seq154 Length=17905225 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||||||||||||| ||| || |||| | || || Sbjct 1925430 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGACCATCCTCA 1925489 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| ||||| ||||| | ||| ||||||||| Sbjct 1925490 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 1925549 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || | ||| ||||||| || || |||||| Sbjct 1925550 ATCTTGGCCTTCACGTTGTCGATGGTATCGGAGCTCTCAACCTCCAGTGTGATTGTCTTG 1925609 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||||||||| ||||| Sbjct 1925610 CCGGTAAGAGTCTTCACAAAGATCTGCAT 1925638 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||| || ||||| ||| || |||| | || Sbjct 1925655 AAGACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGACCATCC 1925714 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || |||||||| ||||||| ||| ||||| || || | ||| |||||||| Sbjct 1925715 TCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATACCTTCCTTGTCT 1925774 Query 45245 GCAATTTTTTGCTTAACCGCCGCC-ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 |||||| |||| || | | | | |||| | ||| ||||||| ||||| || Sbjct 1925775 TGAATTTTG-GCTTTCACGTTGTCGATGGTGTCAGAGCTCTCAACCTCCAAAGTAATGGT 1925833 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || |||| ||| ||||| ||||||||||| Sbjct 1925834 CTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 1925866 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||| |||||||| ||| || || |||| ||| Sbjct 1926114 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCTTCC 1926173 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||||||||| || | || ||| || || ||||| | || ||||| ||| Sbjct 1926174 AACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTATCCTGG 1926233 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | | |||| | |||||||| | ||| || |||||| Sbjct 1926234 ATTTTGGCTTTAACGTTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTG 1926293 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| |||||||| ||||| Sbjct 1926294 CCGGTGAGAGTCTTAACAAAGATCTGCAT 1926322 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||| |||||||| ||| || || |||| ||| Sbjct 1939380 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCTTCC 1939439 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||||||||| || | || ||| || || ||||| | || ||||| ||| Sbjct 1939440 AACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTATCCTGG 1939499 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | | |||| | |||||||| | ||| || |||||| Sbjct 1939500 ATTTTGGCTTTAACGTTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTG 1939559 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| |||||||| ||||| Sbjct 1939560 CCGGTGAGAGTCTTAACAAAGATCTGCAT 1939588 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||| || ||||| ||| || ||| | || Sbjct 1938921 AAAACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCC 1938980 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || |||||||| ||||||| || ||||| || || | ||| |||||||| Sbjct 1938981 TCAAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATACCTTCCTTGTCT 1939040 Query 45245 GCAATTTTTTGCTTAACCGCCGCC-ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 |||||| |||| || | | | | |||| | ||| ||||||| || || || Sbjct 1939041 TGAATTTTG-GCTTTCACGTTGTCGATGGTGTCAGAGCTCTCGACCTCCAAAGTGATGGT 1939099 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||| ||||| ||||||||||| Sbjct 1939100 TTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 1939132 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || || | || || || || ||||||||||| Sbjct 1925903 CTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCATCTTCGAGCTGCTTTCCGGCGAA 1925962 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | ||||||||||| || || ||| || Sbjct 1925963 GATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTT 1926022 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||| ||||||| || |||||||| ||||| || || || || Sbjct 1926023 GTCGATGGTGTCAGAACTCTCGACCTCCAAAGTGATCGTCTTTCCCGTTAGGGTTTTGAC 1926082 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 1926083 GAAGATCTGCAT 1926094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || || | || || || || ||||||||||| Sbjct 1939169 CTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCATCTTCGAGCTGCTTTCCGGCGAA 1939228 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | ||||||||||| || || ||| || Sbjct 1939229 GATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTT 1939288 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||| ||||||| || |||||||| ||||| || || || || Sbjct 1939289 GTCGATGGTGTCAGAACTCTCGACCTCCAAAGTGATCGTCTTTCCCGTTAGGGTTTTGAC 1939348 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 1939349 GAAGATCTGCAT 1939360 >seq426 Length=14042796 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||| || ||| |||| | || || Sbjct 4567113 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGTGTGCGACCATCCTCA 4567172 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| ||||| ||||| | || |||||||| Sbjct 4567173 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGG 4567232 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | |||||| ||||| Sbjct 4567233 ATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCGAGGGTAATTGTCTTT 4567292 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||||||||| ||||| Sbjct 4567293 CCGGTGAGTGTCTTCACAAAGATCTGCAT 4567321 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | || ||||| || || || |||||||||||| ||||| || Sbjct 4567550 GCCACCACGCAGACGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCTGC 4567609 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || || || ||||||||||| ||||||| ||| ||||| ||||| Sbjct 4567610 CAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 4567669 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| ||| ||| || ||| || | | | |||| | || || Sbjct 4567670 GATGCCTTCCTTATCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCAAC 4567729 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | |||||| |||||||| || ||||||||||| ||||| ||||| Sbjct 4567730 CTCGAGGGTAATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 4567777 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||| |||||||||||||| || ||| ||| | || || Sbjct 4567797 ACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGCTAGTGTACGACCATCCTCG 4567856 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || ||||||| || ||||| || || | |||||||||||| Sbjct 4567857 AGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGG 4567916 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | ||||| || ||| ||||||| || || || || Sbjct 4567917 ATCTTAGCCTTAACGTTGTCAATAGTGTCCGAACTCTCGACCTCCAAAGTGATGGTTTTT 4567976 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||| || || ||||| ||||| Sbjct 4567977 CCAGTCAAAGTTTTAACGAAGATCTGCAT 4568005 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||| |||||||| ||| || || | || ||| Sbjct 4568253 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCATCTTCC 4568312 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| || | || || || || || || | |||||||| ||| | Sbjct 4568313 AGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGTGGGATTCCCTCCTTATCCTGA 4568372 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||||| | | |||| | |||||||| | ||| || ||||| Sbjct 4568373 ATCTTTGCTTTAACGTTATCGATCGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTCTTT 4568432 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| || ||||| ||||| Sbjct 4568433 CCGGTGAGAGTCTTAACGAAGATCTGCAT 4568461 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || | | |||| || || || |||||||| || Sbjct 4568042 CTCCTTCTGTATGTTGTAGTCAGCGAGAGTTCTACCGTCCTCGAGCTGCTTTCCGGCAAA 4568101 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| || ||||| || || | ||||||||||| || || ||| || Sbjct 4568102 GATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACATT 4568161 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | || || ||||||||| | || |||||||| ||||| || || || || Sbjct 4568162 GTCGATGGTATCAGAACTCTCCACCTCGAGTGTGATCGTCTTTCCCGTTAGGGTTTTGAC 4568221 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 4568222 GAAGATCTGCAT 4568233 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||||||||||| || || ||| | || || Sbjct 4567341 ACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCCGCCAAGGTACGACCATCCTCG 4567400 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | || || ||||| ||||| | || || |||||| Sbjct 4567401 AGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCCTGG 4567460 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| || || | |||||||||||| Sbjct 4567461 ATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCGACTTCAAGAGTAATCGTCTTG 4567520 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||| || || |||||| Sbjct 4567521 CCTGTAAGGGTCTTCACGAATATCTGCATG 4567550 >seq72 Length=2765197 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || ||||| ||||||||| |||||||||||| ||| ||| |||| ||||| ||| Sbjct 416007 TGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCCGTCTTCCAGCTGT 416066 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 ||||||||||||||||| ||||| ||||| || || | || |||||||| || || Sbjct 416067 TTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTC 416126 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 || || | | | |||| || ||||| | ||| || ||||| ||||| Sbjct 416127 GCTTTCACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTTATTGTCTTCCCCGTT 416186 Query 45314 AGAGTCTTCACAAAGATTTGCATGTT 45339 || || ||||||||||| ||||| || Sbjct 416187 AGGGTTTTCACAAAGATCTGCATCTT 416212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395072128043398