Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq154 98.7 8e-16 >seq154 Length=17905225 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||||||| || || || ||||||||||| ||||||| ||| || ||| Sbjct 1938693 AGGACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGACCATCC 1938752 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || || |||| || | || ||||| ||| | ||||||||| || Sbjct 1938753 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCC 1938812 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| | |||| ||||| |||||| | Sbjct 1938813 TGGATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATTGTC 1938872 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| | || || ||||| |||||||| Sbjct 1938873 TTGCCGGTGAGAGTCTTCACAAAGATTTGCAT 1938904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||||||||| || || || || ||||| ||||||| || | ||| || Sbjct 1938924 ACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCCTCA 1938983 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | || ||||| || |||| | ||||| || ||| || | |||||||| || | Sbjct 1938984 AGCTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGA 1939043 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || || || | | | |||||| | |||| || | |||||| |||| Sbjct 1939044 ATTT-TGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCGACCTCCAAAGTGATGGTTTT 1939102 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| ||||| || || |||||||| Sbjct 1939103 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 1939132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379341050363310