Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq365 266 3e-66 seq154 116 3e-21 seq300 114 1e-20 seq72 98.7 9e-16 seq98 87.8 2e-12 >seq365 Length=14695327 Score = 266 bits (294), Expect = 3e-66 Identities = 600/888 (68%), Gaps = 23/888 (3%) Strand=Plus/Plus Query 57537 AGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||| ||| |||||||||||| |||| ||| | || ||| | |||||||| ||||| || Sbjct 6185589 AGATTCTGT-ATGTTTCCGATTCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGA 6185647 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 |||||||| ||||| | |||||||| || || || | || |||| ||||| Sbjct 6185648 GGCATCGTTCTGGACGGCGGAAGAAGTCGATCTATCACAAGACGGTCGCGACTGGGAGAA 6185707 Query 57656 CCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGA 57715 ||||| || ||| || | || || |||||||| | || || |||||||| || || Sbjct 6185708 TCTCAACGACGGCGAGCGACACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAGA 6185767 Query 57716 TGGTATTGTTAACGAGAATTTGG----TCGAAAGATTTTCACAAGAAGTGCAAGTGACGG 57771 || || || |||||| | | ||| || | | || || ||||| ||| Sbjct 6185768 CGGAATCGTCCTAGAGAATCTCGCTTCCCGATTCATGTCC----GATGTCCAAGTCTCGG 6185823 Query 57772 AGGCGAGATGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTAT 57830 ||||| | |||||| ||||| || || | || ||||| || | || || || ||||| Sbjct 6185824 AGGCGCG-TGCTTTCTACGGTTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTAC 6185882 Query 57831 TCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCG 57890 || ||| |||| |||||| | ||||||||| | |||| | || ||| ||| Sbjct 6185883 AGTCTCCTCCTCGACACGTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGCGCA 6185942 Query 57891 ATCGAAACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAG 57949 |||||||| || || ||| |||| ||||| || ||||| | || | ||||| | Sbjct 6185943 ATCGAAACCATCCCTTGCG-TCGCGAAGAAAGCTCAGTGGGCGATGACGTGGATCGA--- 6185998 Query 57950 CGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009 || | || ||||| ||| | | |||| |||||| |||||||||||| ||||| Sbjct 6185999 CGGATCTCAGACTTTCGCAGAGCGAATCGTCGCTTTCGCCTGCGTCGAAGGTATCTTCTT 6186058 Query 58010 TTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGA 58068 || || ||||| ||| | || || ||| | |||||||| || || ||||| || | | Sbjct 6186059 CTCCGGTAGCTTCTGC-TCGATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGATTAA 6186117 Query 58069 CGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAA 58128 | || |||||||||||| || || ||||| || | || ||||| |||||||| | Sbjct 6186118 CCTTCTCCAACGAGTTGATCTCTCGAGACGAAGGCTTACACTGCGATTTCGCGTGCCTCA 6186177 Query 58129 TGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGG 58188 | ||| ||| | | || | ||| ||| ||| | | || || ||| | Sbjct 6186178 TCTACACTCTGTTGAGGACGAAGCTCACGGAGGAGCGCGTGAAGTCGATCGTCTGCGACG 6186237 Query 58189 CGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGA 58248 | |||| |||||| | |||||||| ||| || || || || || | || |||| Sbjct 6186238 CCGTCGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTGGGGATGA 6186297 Query 58249 ACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT-- 58306 || ||| |||||| |||| || ||||||||||| || || |||||| | || Sbjct 6186298 ACCGTGACTTGATGAGTCAGTATATCGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTG 6186357 Query 58307 GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCT 58366 | | | | ||| ||| | ||||||||||||| ||| | | |||||||| Sbjct 6186358 GGTACGGTAAGGTC--TACGGTGTGGCTAATCCGTTTGATTGGATGGAGTTAATCTCGCT 6186415 Query 58367 CGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 |||| || |||||||||||||| || | |||| | || || ||||| Sbjct 6186416 TCAGGGTAAAACAAACTTTTTCGAGAAGAGAGTTGGTGATTACCAAAA 6186463 >seq154 Length=17905225 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || ||||| || |||||| |||| || ||| || Sbjct 1926322 ATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCT 1926263 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| ||| |||||||| | || || || ||| Sbjct 1926262 GACACCATCGATAACGTTAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCGGATCAG 1926203 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || |||||||||||| |||| || |||||| ||| Sbjct 1926202 CAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGGACTTTGGCCGATTACAAC 1926143 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| || ||||| |||| || || || | || |||| Sbjct 1926142 ATCCAGAAGGAATCCACCCTTCACTTGGTCCTCAGGCTCCGTGGTGGTA 1926094 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || ||||| || |||||| |||| || ||| || Sbjct 1939588 ATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCT 1939529 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| ||| |||||||| | || || || ||| Sbjct 1939528 GACACCATCGATAACGTTAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCGGATCAG 1939469 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || |||||||||||| |||| || |||||| ||| Sbjct 1939468 CAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGGACTTTGGCCGATTACAAC 1939409 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| || ||||| |||| || || || | || |||| Sbjct 1939408 ATCCAGAAGGAATCCACCCTTCACTTGGTCCTCAGGCTCCGTGGTGGTA 1939360 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||||| || ||||| || |||||| | || || || || Sbjct 1938904 ATGCAAATCTTTGTGAAGACTCTCACCGGCAAGACAATCACCCTTGAAGTCGAGAGCTCT 1938845 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | || ||||||||||||| | || || || ||| Sbjct 1938844 GACACTATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 1938785 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | || || | || || |||||| ||| Sbjct 1938784 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACATTGGCCGATTACAAC 1938725 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| ||||| |||| || Sbjct 1938724 ATTCAGAAGGAGTCGACACTTCACTTGGTCCT 1938693 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || ||||| || ||||| | || ||||| ||| Sbjct 1925638 ATGCAGATCTTTGTGAAGACTCTTACCGGCAAGACAATCACACTGGAGGTTGAGAGCTCC 1925579 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||||||| | || || |||||| Sbjct 1925578 GATACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCAG 1925519 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | || || | || || |||||| ||| Sbjct 1925518 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACAAC 1925459 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || |||||||| |||| || || || | || |||| Sbjct 1925458 ATTCAGAAGGAGTCCACTCTTCACTTGGTCCTCAGGCTCCGTGGTGGTA 1925410 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||| || || || |||||| | || || || ||| Sbjct 1925410 ATGCAGATTTTCGTCAAGACCCTGACCGGGAAGACCATCACCCTTGAAGTCGAGAGCTCC 1925351 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || |||||| ||||| | || || || ||| Sbjct 1925350 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCTCCAGATCAG 1925291 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | || || | || || |||||| ||| Sbjct 1925290 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATTACAAC 1925231 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||||||||| |||| || Sbjct 1925230 ATCCAGAAGGAGTCGACTCTTCACTTGGTCCT 1925199 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| || || || ||||| | || ||||| ||| Sbjct 1938676 ATGCAGATTTTCGTCAAGACCTTGACCGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 1938617 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||| |||||| | || || || ||| Sbjct 1938616 GACACCATTGACAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 1938557 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| |||||| | || || | || | ||||| ||| Sbjct 1938556 CAGCGTCTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACACTTGCTGATTACAAC 1938497 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| ||||||||||| |||| || Sbjct 1938496 ATTCAGAAAGAGTCGACTCTTCACTTGGTCCT 1938465 >seq300 Length=15655920 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| |||||||| || || || || || || ||||| || | || |||||| | Sbjct 7118139 AAAAATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACGATAACACTAGAGGTTGAATC 7118080 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | |||| | || || || || |||||||||||| | ||||| || Sbjct 7118079 ATCGGATACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCGCCGGA 7118020 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||| || || ||||| || || || ||||||||| | ||| || ||||| Sbjct 7118019 TCAGCAGCGACTGATCTTCGCCGGAAAGCAATTGGAAGACGGGAGGACACTGGCGGATTA 7117960 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || |||||||| ||||| |||| || | ||||| || || Sbjct 7117959 CAACATCCAGAAGGAATCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGG 7117909 >seq72 Length=2765197 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || || || || || || || || || || || ||| | || || ||| Sbjct 416214 CAAAGATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACAATAACCCTTGAGGTCGAAT 416155 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||| |||| |||| | || ||| || || ||||||||||| | || || | Sbjct 416154 CGTCAGACACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGG 416095 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| | |||||||| || |||||| |||||||| || | ||| | Sbjct 416094 ACCAGCAGCGATTGATATTCGCCGGAAAACAGCTGGAAGACGGGCGCACACTCGCCGACT 416035 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || ||||| |||||||| || || Sbjct 416034 ACAACATACAGAAGGAGTCGACGCTTCATCTCGTGCT 415998 >seq98 Length=1871237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||| |||| ||||| || ||||| || || || || || || || |||||| |||| || Sbjct 1506503 GAAGCAAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTC 1506562 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 || | ||||| | |||| | ||||| | || |||||||||||| | || Sbjct 1506563 GAGTCCTCCGATACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCT 1506622 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC 31363 || ||||||||||| | || ||||| || || ||| | || ||| || | | Sbjct 1506623 CCGGACCAGCAGCGATTGATCTTCGCCGGGAAGCAGCTCGAGGACGGACGCACCCTCGCC 1506682 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || || |||||||| ||||| || || || Sbjct 1506683 GACTACAACATCCAGAAGGAATCGACGCTTCACCTCGTCCT 1506723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762845012960