Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq365 158 2e-33 seq33 95.1 2e-14 seq1 91.5 2e-13 >seq365 Length=14695327 Score = 158 bits (174), Expect = 2e-33 Identities = 394/588 (67%), Gaps = 8/588 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||||||||| | || ||||||| | || || ||||| || || || | | Sbjct 6186172 CACGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAT 6186113 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || ||||| || |||||||| || || || ||| ||||| |||||| Sbjct 6186112 CCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAG 6186053 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCT-CCATAACCGGCGCTGTCATGTA 33759 || ||||| || ||| || || || | | || |||| | | | | | | | | | | Sbjct 6186052 ATACCTTCGAC-GCAGGCGAAAGCGACGATTCGCTCTGCGAAAGTCTGAGAT-CCGTCGA 6185995 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 ||||| | ||||| | || ||||| || ||||| || ||||| || || | Sbjct 6185994 TCCACGTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGGA 6185935 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33879 |||||| || | | || || | || || | || || |||| | ||||| ||||| | Sbjct 6185934 AGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTACGTGTCGAGGAGGAGACTGTACATCT 6185875 Query 33880 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33939 |||| || || || ||||| || ||||| || ||||||||| | ||||| | | | Sbjct 6185874 CCGAGTGGATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTT 6185815 Query 33940 GCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 | || || | ||| ||||| || | ||| || || ||||| || ||| || Sbjct 6185814 GGACATC-GGACATGAATCGGGAAGCGAGATTCTCTAGGACGATTCCGTCTGAGGCGGCG 6185756 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATC 34057 || || || | || ||||| || || | | ||| | | || | || || | ||| || Sbjct 6185755 AAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGT-TGAGATTCTCCCAGTC 6185697 Query 34058 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 34117 |||| |||| ||| ||||||||| | ||||| || |||||||| ||||| || Sbjct 6185696 GCGACCGTCTTGTGATAGATCGACTTCTTCCGCCGTCCAGAACGATGCCTCGGCCTTCTT 6185637 Query 34118 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 ||||| | |||||| | | ||||| || || || ||| ||||| Sbjct 6185636 GTACATCTCCCAGATCTGTGGGTATTGAATCGGAAACATACAGAATCT 6185589 >seq33 Length=9343251 Score = 95.1 bits (104), Expect = 2e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||||| || || | |||||||| || || || |||||| | ||| | || || Sbjct 5836781 AGTTCCCGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 5836840 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | || || ||||| ||||| | ||| ||||| || || | || | ||| | Sbjct 5836841 GTAAGTTTGTATTGCGGAGTCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATCA 5836899 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 |||||||||||| |||||||| | |||| | | ||| || | ||| ||| | || | Sbjct 5836900 GCATGTGCTGAGGCCTTTCAACCACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCAA 5836959 Query 63841 AAGTTTTAAAACCAAAATAGT 63861 |||||| || ||||| |||| Sbjct 5836960 GAGTTTTGAATCCAAAGTAGT 5836980 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | ||| || | ||| | || | | |||||||| |||||| Sbjct 5836447 TCCTCCTTGATCGACATAGCGAGCAGTATCATTGAATACACGTAGCATTGGAACAATACC 5836506 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || || || | |||| ||||||| || || || ||| Sbjct 5836507 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTGGCACGGATGTTGTGAACTGA 5836566 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || ||||| || ||| ||| | || || ||| || || ||||| || Sbjct 5836567 AACACCAATACCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAATGTATCATATAT 5836626 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 5836627 TCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 5836668 >seq1 Length=21755756 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 || |||||||| ||| || | |||||||| || || || |||||| | ||| | || Sbjct 437555 AGGAGTTCCCGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAA 437496 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCA 63777 || ||| || | || || || || ||||| | ||| ||||| || || | || | || Sbjct 437495 ATGGTAAGTTTGTATTGCGGATTCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCA 437437 Query 63778 TTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63837 | | |||||||||||| || ||||| | |||| | | ||| || | ||| ||| | | Sbjct 437436 TCAGCATGTGCTGAGGCCTCTCAACTACTTTGCCTTGCACTTTTAAGAGGTATGATCTCT 437377 Query 63838 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | | |||||| || ||||| |||| ||| || || || || || || || Sbjct 437376 CAAGAGTTTTGAATCCAAAGTAGTCATATTCGAAATCGCGATCATAGATGAT 437325 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | |||||| | ||| | || | | |||||||| |||||| Sbjct 437884 TCCTCCTTGATCGACATAGCGAGCGGTATCATTGAATACACGTAGCATTGGAACAATACC 437825 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| ||||| || || | |||| | ||||| || || || ||| Sbjct 437824 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 437765 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || ||||| || ||| ||| | || || ||| || || ||||| || Sbjct 437764 AACACCAATACCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAATGTATCATATAT 437705 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || || ||||||||||| ||||| | ||||| |||||| Sbjct 437704 TCCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 437662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629812577204640