Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq365 150 2e-31 seq33 89.7 7e-13 seq1 86.0 8e-12 >seq365 Length=14695327 Score = 150 bits (166), Expect = 2e-31 Identities = 394/590 (67%), Gaps = 12/590 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||||||||||| || ||||||| | || || |||||||| || || | | Sbjct 6186172 CACGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAT 6186113 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||| || ||||| || |||||||| || || || ||| | | | || || ||||| Sbjct 6186112 CCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATCGA-GCAGAAGCTACCGGAGAAGAA 6186054 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA--CCG-GCACTGTCATG 36333 || ||||| || || || || | | || |||| | || | | | | ||| Sbjct 6186053 GATACCTTCGACGCAGGCGAAAGCGACGATTCGCTCTGCGAAAGTCTGAGATCCGTC--- 6185997 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 |||||| | ||||| | || ||||| || ||||| || || || || || Sbjct 6185996 GATCCACGTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCG 6185937 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 ||||||| || | | || || | || || | || || || | | ||||| ||||| Sbjct 6185936 GAAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTACGTGTCGAGGAGGAGACTGTACAT 6185877 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 ||||| || || || ||||| || || || || ||||||||| | ||||| | | Sbjct 6185876 CTCCGAGTGGATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGAC 6185817 Query 36514 CTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 36572 || || || | ||| ||||| || | ||| || || |||||||| ||| | Sbjct 6185816 TTGGACATC-GGACATGAATCGGGAAGCGAGATTCTCTAGGACGATTCCGTCTGAGGCGG 6185758 Query 36573 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TTTGGTGTTAGTTTATTCCAA 36631 | || || || | || ||||| || || | | ||| | || | || || | ||| Sbjct 6185757 CGAAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGT-TGAGATTCTCCCAG 6185699 Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691 || |||| |||| ||| ||||||||| | ||||| || |||||||| ||||| Sbjct 6185698 TCGCGACCGTCTTGTGATAGATCGACTTCTTCCGCCGTCCAGAACGATGCCTCGGCCTTC 6185639 Query 36692 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 || ||||| | |||||| | | |||||||| ||||| ||| ||||| Sbjct 6185638 TTGTACATCTCCCAGATCTGTGGGTATTGAATCGGAAACATACAGAATCT 6185589 >seq33 Length=9343251 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||||| || || | |||||||| || || || |||||| | ||| | || || Sbjct 5836781 AGTTCCCGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 5836840 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| || | || || ||||| ||||| | ||| ||||| || || | || | ||| | Sbjct 5836841 GTAAGTTTGTATTGCGGAGTCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATCA 5836899 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 |||||||||||| |||||||| | ||| | | ||| || | ||| ||| | || | Sbjct 5836900 GCATGTGCTGAGGCCTTTCAACCACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCAA 5836959 Query 66634 AAGTTTTAAAACCAAAATAGT 66654 |||||| || ||||| |||| Sbjct 5836960 GAGTTTTGAATCCAAAGTAGT 5836980 >seq1 Length=21755756 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||||| ||| || | |||||||| || || || |||||| | ||| | || || Sbjct 437552 AGTTCCCGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 437493 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| || | || || || || ||||| | ||| ||||| || || | || | ||| | Sbjct 437492 GTAAGTTTGTATTGCGGATTCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATCA 437434 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 |||||||||||| || ||||| | ||| | | ||| || | ||| ||| | || | Sbjct 437433 GCATGTGCTGAGGCCTCTCAACTACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAA 437374 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 |||||| || ||||| |||| ||| || || || || || || || Sbjct 437373 GAGTTTTGAATCCAAAGTAGTCATATTCGAAATCGCGATCATAGATGAT 437325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658167551071920