Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq154 127 2e-24 seq426 116 4e-21 seq33 87.8 2e-12 >seq154 Length=17905225 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || |||||||| |||||||| ||||| Sbjct 1938450 CCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCTTTCTGAATGTTGTAATCAGCA 1938509 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || ||||||||||||||||| |||| ||||| |||||||| || || Sbjct 1938510 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGATCTGGGGGG 1938569 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || || | | || | ||||||| | ||| ||| Sbjct 1938570 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACC 1938629 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 1938630 TCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTGACGAAAATCTGCATA 1938677 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || || ||||| |||||| | Sbjct 1925184 CCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCC 1925243 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || ||||| |||| ||||| |||||||| ||||| Sbjct 1925244 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGAGGA 1925303 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | || | ||||||| | ||| || Sbjct 1925304 ATCCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGACT 1925363 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | ||||| ||||||| || || ||||| || |||||| Sbjct 1925364 TCAAGGGTGATGGTCTTCCCGGTCAGGGTCTTGACGAAAATCTGCATA 1925411 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || |||||||| |||||| | Sbjct 1938678 CCACCACGAAGACGGAGGACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAATCGGCC 1938737 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || || ||||| || ||||| |||| ||||| |||||||| || || Sbjct 1938738 AATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGGGGG 1938797 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || || | | || | ||||| | | ||| || Sbjct 1938798 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACT 1938857 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | ||||||||||| | || || || || ||||||||| Sbjct 1938858 TCAAGGGTGATTGTCTTGCCGGTGAGAGTCTTCACAAAGATTTGCATA 1938905 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| || |||||||| |||||| || |||| || || Sbjct 1925430 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGACCATCCTCA 1925489 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| |||| ||||| ||||| || ||||| || ||||| ||||| | Sbjct 1925490 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 1925549 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | || |||| | ||| ||||| | || | |||||| Sbjct 1925550 ATCTTGGCCTTCACGTTGTCGATGGTATCGGAGCTCTCAACCTCCAGTGTGATTGTCTTG 1925609 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || || || || || |||||| Sbjct 1925610 CCGGTAAGAGTCTTCACAAAGATCTGCATA 1925639 >seq426 Length=14042796 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||| ||||||| || || || || |||||||| ||||| | Sbjct 4567323 CCACCACGCAGACGCAGAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCCGCC 4567382 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || |||||||| || ||||| |||| ||||||||||| || ||||| Sbjct 4567383 AAGGTACGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 4567442 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || || | | || | ||||||| | ||| || Sbjct 4567443 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCGACT 4567502 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||||||| || | || || |||||||| ||||| Sbjct 4567503 TCAAGAGTAATCGTCTTGCCTGTAAGGGTCTTCACGAATATCTGCAT 4567549 >seq33 Length=9343251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || ||||| | || | ||||| || ||||| ||||| || || ||||| | Sbjct 3270472 CCACCGCGCAAACGAAGGACAAGGTGAAGAGTTGACTCCTTTTGGATATTGTAATCAGCC 3270531 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||| |||||||| ||| | || || | |||||| || |||| Sbjct 3270532 AAAGTACGACCATCTTCGAGTTGTTTACCGGCAAAAATAAGTCTTTGCTGGTCAGGAGTG 3270591 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | || ||||||| | | || ||| Sbjct 3270592 ATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAACTGTGTTTGAGCTTTCGACC 3270651 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | |||||||| || | || ||||| || || |||||| Sbjct 3270652 TCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCATA 3270699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060043889600