Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq365 170 3e-37 seq1 109 8e-19 seq33 104 3e-17 >seq365 Length=14695327 Score = 170 bits (188), Expect = 3e-37 Identities = 413/617 (67%), Gaps = 10/617 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||||||||| | || ||||||| | || | |||||||| || || | | Sbjct 6186172 CACGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAT 6186113 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || ||||| || |||||||| || || || ||| || || || ||||| Sbjct 6186112 CCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATCGA-GCAGAAGCTACCGGAGAAGAA 6186054 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA--CTG-GCGCTGTCATG 50135 ||| ||||| || ||| || || || | || |||| | || ||| | | ||| Sbjct 6186053 GATACCTTCGACGCAGGCGAAAGCGACGATTCGCTCTGCGAAAGTCTGAGATCCGTC--- 6185997 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 |||||| | ||||| | || ||||| || ||||| || ||||| || || Sbjct 6185996 GATCCACGTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCG 6185937 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||||| || | | || || | || || | || || |||| | ||||| ||||| Sbjct 6185936 GAAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTACGTGTCGAGGAGGAGACTGTACAT 6185877 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 ||||| || || || ||||| || ||||| || ||||||||| | ||||| | | Sbjct 6185876 CTCCGAGTGGATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGAC 6185817 Query 50316 CTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 || || || | ||| ||||| ||| | ||| || || |||||||| ||| | Sbjct 6185816 TTGGACATC-GGACATGAATCGGGAAGCGAGATTCTCTAGGACGATTCCGTCTGAGGCGG 6185758 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT 50434 | || || || | || ||||| || || ||| ||| | | || || | ||| | Sbjct 6185757 CGAAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGATTCTCCCAGT 6185698 Query 50435 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 50494 | |||| |||| ||| ||||||||| | ||||| || |||||||| ||||| | Sbjct 6185697 CGCGACCGTCTTGTGATAGATCGACTTCTTCCGCCGTCCAGAACGATGCCTCGGCCTTCT 6185638 Query 50495 TATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTG 50554 | ||||| | |||||| | | ||||| || || || ||| ||||| | || ||| Sbjct 6185637 TGTACATCTCCCAGATCTGTGGGTATTGAATCGGAAACATACAGAATCTGTCAGGGGTTG 6185578 Query 50555 GTGCAAGGATCGGTTCC 50571 | | || | ||| ||| Sbjct 6185577 GAGTCAGAAGCGGCTCC 6185561 >seq1 Length=21755756 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | |||||| | ||| | || | | |||||||| |||||| Sbjct 437884 TCCTCCTTGATCGACATAGCGAGCGGTATCATTGAATACACGTAGCATTGGAACAATACC 437825 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || |||||| | ||||| || || || ||| Sbjct 437824 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 437765 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| || ||| ||| | || || ||| || |||||||| || Sbjct 437764 AACACCAATACCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAATGTATCATATAT 437705 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 437704 TCCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 437662 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||||| ||| || | |||||||| || || || |||||| | ||||| || || Sbjct 437552 AGTTCCCGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 437493 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | || || ||||| ||||| | ||| ||||| || || | || | ||| | Sbjct 437492 GTAAGTTTGTATTGCGGATTCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATCA 437434 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||||||||| || ||||| | ||| | | ||| || | ||| ||| | || | Sbjct 437433 GCATGTGCTGAGGCCTCTCAACTACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAA 437374 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| |||| ||| || || || || || || || Sbjct 437373 GAGTTTTGAATCCAAAGTAGTCATATTCGAAATCGCGATCATAGATGAT 437325 >seq33 Length=9343251 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| || | ||| | || | | |||||||| |||||| Sbjct 5836447 TCCTCCTTGATCGACATAGCGAGCAGTATCATTGAATACACGTAGCATTGGAACAATACC 5836506 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || |||||| ||||||| || || || ||| Sbjct 5836507 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTGGCACGGATGTTGTGAACTGA 5836566 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| || ||| ||| | || || ||| || |||||||| || Sbjct 5836567 AACACCAATACCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAATGTATCATATAT 5836626 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || || ||||||||||| ||||| | ||||| ||||| Sbjct 5836627 TCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 5836668 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||||| || || | |||||||| || || || |||||| | ||||| || || Sbjct 5836781 AGTTCCCGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 5836840 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | || || || || ||||| | ||| ||||| || || | || | ||| | Sbjct 5836841 GTAAGTTTGTATTGCGGAGTCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATCA 5836899 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||||||||| |||||||| | ||| | | ||| || | ||| ||| | || | Sbjct 5836900 GCATGTGCTGAGGCCTTTCAACCACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCAA 5836959 Query 80513 AAGTTTTAAAACCAAAATAGT 80533 |||||| || ||||| |||| Sbjct 5836960 GAGTTTTGAATCCAAAGTAGT 5836980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263071806320