Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq72 91.5 1e-13 seq154 89.7 4e-13 seq33 89.7 4e-13 seq426 86.0 5e-12 >seq72 Length=2765197 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| |||| | ||| || |||| |||| ||||| ||||| || Sbjct 416018 CTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCCGTCTTCCAGCTGTTTTCCGGCGAA 416077 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||||||||| || || | || | ||||| || || |||| | |||| || | Sbjct 416078 TATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATT 416137 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | ||||| | ||||| || | ||||| || || || ||||| |||||||| Sbjct 416138 GTCGATGGTGTCTGACGATTCGACCTCAAGGGTTATTGTCTTCCCCGTTAGGGTTTTCAC 416197 Query 43098 AAAAATTTGCATTTT 43112 ||| || ||||| || Sbjct 416198 AAAGATCTGCATCTT 416212 >seq154 Length=17905225 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | || |||||| || | ||||||||||| | Sbjct 1938906 CCACCACGAAGACGCAAAACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCC 1938965 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| | || || | || |||||||| || ||||| | || || || | || Sbjct 1938966 AAGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGG 1939025 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||||| || || || |||| || || | | ||||| ||| |||||| Sbjct 1939026 ATACCTTCCTTGTCTTGAATTTTGGCTTTCACGTTGTCGATGGTGTC-AGAGCTCTCGAC 1939084 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| | ||||||||| || |||||||| Sbjct 1939085 CTCCAAAGTGATGGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 1939132 >seq33 Length=9343251 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||||||| | ||| ||||| | || || | |||||| |||||||| Sbjct 3270507 CTCCTTTTGGATATTGTAATCAGCCAAAGTACGACCATCTTCGAGTTGTTTACCGGCAAA 3270566 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||| | || || || || | | | |||||||| || |||| | ||||| | Sbjct 3270567 AATAAGTCTTTGCTGGTCAGGAGTGATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATT 3270626 Query 43038 GCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||||||||| ||| ||||| || | ||||| || || || || ||||| || | Sbjct 3270627 GTCAACTGTGT-TTGAGCTTTCGACCTCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTTA 3270685 Query 43097 CAAAAATTTGCAT 43109 |||| || ||||| Sbjct 3270686 CAAAGATCTGCAT 3270698 >seq426 Length=14042796 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | ||||||||||| | || |||||| || | ||||||||| | Sbjct 4567550 GCCACCACGCAGACGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCTGC 4567609 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| ||||| | || || | || || ||||| || ||||| | ||| || || | || Sbjct 4567610 CAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 4567669 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCG 43059 | ||||| || || ||| ||| | ||||| || ||| ||||| ||| || Sbjct 4567670 GATGCCTTCCTTATC-CTGAATCTTGGCCTTGACGTTGTCAATGGTGTC-AGAGCTTTCA 4567727 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || || || || ||||| ||||| ||||| || || ||||| Sbjct 4567728 ACCTCGAGGGTAATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 4567777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381366634613004