Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq426 107 2e-18 seq154 100 3e-16 seq300 98.7 1e-15 seq2 87.8 2e-12 seq33 82.4 8e-11 >seq426 Length=14042796 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| ||| || |||| || ||||| || || ||||||||||| | Sbjct 4567323 CCACCACGCAGACGCAGAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCCGCC 4567382 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || ||||| || || ||||| |||| ||||||||||| || ||||| Sbjct 4567383 AAGGTACGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 4567442 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || || || | | || | ||||| | | || ||| Sbjct 4567443 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCGACT 4567502 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||||||| || | || || |||||||| ||||| Sbjct 4567503 TCAAGAGTAATCGTCTTGCCTGTAAGGGTCTTCACGAATATCTGCAT 4567549 >seq154 Length=17905225 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || || ||||| || ||||||||||| Sbjct 1938450 CCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCTTTCTGAATGTTGTAATCAGCA 1938509 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| || ||||| ||||||||||| |||| ||||| |||||||| || || Sbjct 1938510 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGATCTGGGGGG 1938569 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || || || | | || | ||||| | | || || Sbjct 1938570 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACC 1938629 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| |||||||| || || ||||| || |||||| Sbjct 1938630 TCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTGACGAAAATCTGCATA 1938677 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 1925184 CCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCC 1925243 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || ||||| || || ||||| |||| ||||| |||||||| ||||| Sbjct 1925244 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGAGGA 1925303 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | || | ||||| | | || ||| Sbjct 1925304 ATCCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGACT 1925363 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||| ||||||| || || ||||| || |||||| Sbjct 1925364 TCAAGGGTGATGGTCTTCCCGGTCAGGGTCTTGACGAAAATCTGCATA 1925411 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| ||| || || || || |||||||||||| | Sbjct 1938678 CCACCACGAAGACGGAGGACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAATCGGCC 1938737 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| || || || || || ||||| |||| ||||| |||||||| || || Sbjct 1938738 AATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGGGGG 1938797 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || | | || | ||||| | | || ||| Sbjct 1938798 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACT 1938857 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||||||||| | || || || || ||||||||| Sbjct 1938858 TCAAGGGTGATTGTCTTGCCGGTGAGAGTCTTCACAAAGATTTGCATA 1938905 >seq300 Length=15655920 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| || |||| || ||||| || || ||||||||||| | Sbjct 7117909 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCC 7117968 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| ||| |||||| | ||| || || || ||||||| || |||||||| || || Sbjct 7117969 AGTGTCCTCCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGGG 7118028 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||| |||| | ||| || Sbjct 7118029 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTATCCGATGATTCAACC 7118088 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| || || | ||||| ||||| || ||||| Sbjct 7118089 TCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 7118135 >seq2 Length=11923138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTC 143031 || || | ||||| ||||| ||||| || ||||||||||| ||| | || || || Sbjct 8290458 AACACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCT-AGGGTTCTTCCATC 8290400 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| ||||| ||||| ||| | ||||| | ||||||||| || ||||| ||||||||||| Sbjct 8290399 TTCCAGTTGCTTACCGGCAAATATCAGCCTTTGCTGATCAGGTGGTATACCTTCTTTGTC 8290340 >seq33 Length=9343251 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || ||||| | || | |||| || || || ||||| || |||||||| | Sbjct 3270472 CCACCGCGCAAACGAAGGACAAGGTGAAGAGTTGACTCCTTTTGGATATTGTAATCAGCC 3270531 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||||||||||||||| ||| | || || | |||||| || |||| Sbjct 3270532 AAAGTACGACCATCTTCGAGTTGTTTACCGGCAAAAATAAGTCTTTGCTGGTCAGGAGTG 3270591 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | || || |||| | | ||| || Sbjct 3270592 ATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAACTGTGTTTGAGCTTTCGACC 3270651 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | |||||||| || | || ||||| || || |||||| Sbjct 3270652 TCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCATA 3270699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507010356560160