Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq365 165 1e-35 seq1 91.5 2e-13 seq25 86.0 9e-12 >seq365 Length=14695327 Score = 165 bits (182), Expect = 1e-35 Identities = 381/560 (68%), Gaps = 18/560 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| ||||| |||| || || ||||||| ||||| |||||||| Sbjct 6185622 ATCTGGGAGATGTACAAGAAGGCCGAGGCATCGTTCTGGACGGCGGAAGAAGTCGATCTA 6185681 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || | ||| ||| ||||||| || | | || |||||| | || || Sbjct 6185682 TCACAAGACGGTCGCGACTGGGAGAATC---TCAACGACGGCGAGCGACACTTCATCAAA 6185738 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| ||| || ||||||||| || ||||| | ||| Sbjct 6185739 CACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTCCTAGAGAATCTCGCTTCCCGA 6185798 Query 125199 TTC-TCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCAT 125254 ||| | || | || ||| || | |||| | |||||||| ||||| ||||| ||| Sbjct 6185799 TTCATGTCC---GATGTCCAAGTCTCGGAGGCG-CGTGCTTTCTACGGTTTCCAGATCGC 6185854 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||||||||| | |||||||| |||||| | || | |||| |||||| || | Sbjct 6185855 GATTGAGAATATCCACTCGGAGATGTACAGTCTCCTCCTCGACACGTACATCAAGGA-CA 6185913 Query 125315 GCAACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 ||| | | | || ||||| ||||||||| || | || | | || || | Sbjct 6185914 ACAAAGAGAGAGACCATCTCTTCCGCGCAATCGAAACCATCCCTTGCGTCGCGAAGAAAG 6185973 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 |||| |||| ||| ||||||||| | || ||| ||| || || | || | Sbjct 6185974 CTCAGTGGGCGATGACGTGGATCGACGGATCTCAGACTTT---CGCAGAGCGAATCGTCG 6186030 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTC 125492 | |||||| ||| || || |||||||| || ||||| || ||| | || || ||||| Sbjct 6186031 CTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGCT-CGATTTTCTGGCTT 6186089 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||| || || |||||||| ||| | || | |||||||| || ||||||||||| Sbjct 6186090 AAGAAACGTGGTCTCATGCCTGGATTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAA 6186149 Query 125553 GGCCTACACTGTGACTTTGC 125572 ||| ||||||| || || || Sbjct 6186150 GGCTTACACTGCGATTTCGC 6186169 >seq1 Length=21755756 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| |||||| ||| | |||| |||||| | ||||||||| ||||| | Sbjct 2317107 TCAAGAACAATCCTGATGATCGACGGATTATAATGTCAGCTTGGAATCCTCCAGATCTTA 2317166 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCAA 70302 | | |||||||| || || || ||| |||||| | || || ||| | | | |||| | Sbjct 2317167 AGCTGATGGCACTTCCTCCATGCCACATGTTTG-CACAATTCTACGTTGCAA-ATGGAGA 2317224 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 | | ||||| |||||||||| | ||||||||||| || |||||||| |||||||| Sbjct 2317225 ACTTTCATGTCAAATGTATCAGCGCTCAGCCGACATGGGTCTTGGTGTACCATTTAACAT 2317284 Query 70363 TGC 70365 ||| Sbjct 2317285 TGC 2317287 >seq25 Length=9441222 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 |||||||| ||||| |||||| | || || ||||| || |||| | |||||| || Sbjct 185951 GCCATCTTCTGGCTTAAGAAGAGAGGTCTTATGCCGGGTTTGACCTTCTCAAACGAGCTT 185892 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||| |||||||||| ||||||||||||||||| Sbjct 185891 ATATCGAGAGACGAGGGGCTACACTGTGACTTTGC 185857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741053290052880