Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq72 96.9 3e-15 seq300 91.5 1e-13 seq426 86.0 5e-12 >seq72 Length=2765197 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || || ||||||||||| ||| || | | | ||||||| | || Sbjct 416006 ATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCCGTCTTCCAGCTG 416065 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 ||| || ||| ||||||| || || ||||| ||| |||||||| ||||| || || Sbjct 416066 TTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 416125 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || ||||| || ||| || || | ||| || || || || | Sbjct 416126 CGCT-TTCACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTTATTGTCTTCCCCG 416184 Query 15339 TCAGAGTTTTTACAAAAATTTGCATATTTG 15368 | || ||||| ||||| || ||||| |||| Sbjct 416185 TTAGGGTTTTCACAAAGATCTGCATCTTTG 416214 >seq300 Length=15655920 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | ||| || ||||| || || || || || ||||||||||| Sbjct 7117909 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCC 7117968 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | ||| ||||||| ||||| || || ||| | |||| || || || || || Sbjct 7117969 AGTGTCCTCCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGGG 7118028 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315 |||||||| ||||| || || ||| ||| | || || ||||| | || ||| || Sbjct 7118029 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTATC-CGATGATTCAAC 7118087 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 |||| || || || || || || || ||||| || ||||| ||||| ||| Sbjct 7118088 CTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTTT 7118139 >seq426 Length=14042796 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||||||||| || || || ||||||||||| || ||| |||| |||| || Sbjct 4568025 ACTAGATGAAGGGTCGACTCCTTCTGTATGTTGTAGTCAGCGAGAGTTCTACCGTCCTCG 4568084 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || || | ||||| | ||| ||||| ||| ||||| || ||||| Sbjct 4568085 AGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGG 4568144 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || |||||||| | | || || || | || || || || Sbjct 4568145 ATCTTAGCCTTGACATTGTCGATGGTATCAGAACTCTCCACCTCGAGTGTGATCGTCTTT 4568204 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || || || |||||| Sbjct 4568205 CCCGTTAGGGTTTTGACGAAGATCTGCATA 4568234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362176383830358