Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq426 87.8 1e-12 seq25 86.0 4e-12 >seq426 Length=14042796 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||||||||| | |||||||| || || ||||||||||| | ||| | | Sbjct 4567563 CGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCTGCCAAGGTACGACCA 4567622 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | |||||||| || || || | |||||||||| || |||||||| || Sbjct 4567623 TCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTA 4567682 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || | | ||| ||||| | || ||| || || || Sbjct 4567683 TCCTGAATCTTGGCC---TTGACGTTGTCAATGGTGTCAGAGCTTTCAACCTCGAGGGTA 4567739 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || |||||||| || ||||| || ||||| Sbjct 4567740 ATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 4567777 >seq25 Length=9441222 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||||| | ||||| || | || ||||||||||| ||| ||||||||| Sbjct 6394030 ACCACCTCTTAACCTGAGAACCAAGTGGAGAGTTGACTCTTTTTGGATACTGTAATCAGC 6393971 Query 33202 CAAATTGAGT-TGGTCATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 || |||| || ||||| | ||||| || ||| || | | ||||||||| | Sbjct 6393970 CA----GAGTACGGCCATCCTCGAGCTGCTTCCCGGCAAAAATAAGTCTTTGCTGGTCAG 6393915 Query 33258 TGGGTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || |||||||| || | | | ||| || || | | ||| |||| | Sbjct 6393914 GAGGAATACCTTCTTTATCTTGGATCTTGGCC---TTGACATTGTCAATGATGTCTGAGC 6393858 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||| || || ||||| || || || |||||||| ||||| || |||||||| Sbjct 6393857 TTTCAACCTCAAGGGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 6393803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318775121304924