Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq426 145 2e-29 seq33 145 2e-29 seq300 138 3e-27 seq25 138 3e-27 seq98 113 1e-19 seq365 109 1e-18 seq154 102 2e-16 >seq426 Length=14042796 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || |||||||| | || || || ||||| || || ||||||| ||||||||| Sbjct 4568016 AGCCTGAGGACTAGATGAAGGGTCGACTCCTTCTGTATGTTGTAGTCAGCGAGAGTTCTA 4568075 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || || ||||| ||||| || | ||| || || || || || ||||| || Sbjct 4568076 CCGTCCTCGAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATTCCCTCC 4568135 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || || ||||| || || ||||| || | |||||| | || ||||| ||||| Sbjct 4568136 TTGTCTTGGATCTTAGCCTTGACATTGTCGATGGTATCAGAACTCTCCACCTCGAGTGTG 4568195 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| || || |||||||| Sbjct 4568196 ATCGTCTTTCCCGTTAGGGTTTTGACGAAGATCTGCAT 4568233 Score = 118 bits (130), Expect = 2e-21 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| || || | | || | ||| || || || || ||||| Sbjct 4567581 GTCGACTCCTTCTGAATATTGTAATCTGCCAAGGTACGACCATCCTCAAGCTGCTTTCCG 4567640 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | |||||| || || ||||| || ||||| |||||||||||||| || || Sbjct 4567641 GCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGAATCTTGGCCTTG 4567700 Query 104483 ACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || | ||| || ||| ||| ||||| || ||||| ||||| || ||||| Sbjct 4567701 ACGTTGTCAATGGTGTCAGAGCT---TTCAACCTCGAGGGTAATTGTCTTGCCGGTAAGA 4567757 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || || |||||||| Sbjct 4567758 GTCTTCACGAAGATCTGCAT 4567777 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || | || | || ||||| ||||| || || || || | | || | Sbjct 4568244 AGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGG 4568303 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || ||||| || || || ||||| || ||||| || || ||||| || Sbjct 4568304 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGTGGGATTCCCTCC 4568363 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||||||||||||||| || || || | || ||| ||| ||||| || || Sbjct 4568364 TTATCCTGAATCTTTGCTTTAACGTTATCGATCGTGTCGGAGCTTTCCACCTCAAGGGTG 4568423 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || || || || || || |||||||| Sbjct 4568424 ATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 4568461 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || || || | | || | ||| || || || || |||||| Sbjct 4567353 GTCGATTCCTTCTGAATGTTGTAATCCGCCAAGGTACGACCATCCTCGAGCTGCTTTCCA 4567412 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | || || || ||||| || |||||||| ||||| ||||| || || Sbjct 4567413 GCGAAGATGAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTG 4567472 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| ||| || | || || || || ||||| ||||| || ||||| || Sbjct 4567473 ACATTGTCAATGGTGTCGG-AGCTCTCGACTTCAAGAGTAATCGTCTTGCCTGTAAGGGT 4567531 Query 104542 TTTTACAAATATCTGCAT 104559 || || ||||||||||| Sbjct 4567532 CTTCACGAATATCTGCAT 4567549 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || || |||| ||| || | ||| || || || || ||||| Sbjct 4567809 GTCGACTCTTTCTGAATGTTGTAATCAGCTAGTGTACGACCATCCTCGAGCTGCTTTCCG 4567868 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||| || || || || || ||||| || || ||||| ||||| || || Sbjct 4567869 GCAAAGATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTA 4567928 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || ||||| | || || || || ||||| | ||| Sbjct 4567929 ACGTTGTCAATAGTGTCCGAACTCTCGACCTCCAAAGTGATGGTTTTTCCAGTCAAAGTT 4567988 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 4567989 TTAACGAAGATCTGCAT 4568005 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 104378 ATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTC 104437 || || ||||||| | | | ||| || || || ||||| ||||| ||| |||||| Sbjct 791420 ATGTTGTAGTCAGCCAATATCCGACCATCCTCAAGCTGTTTGCCAGCGTAAAGCAGCCTC 791361 Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || || || || || || || ||||||||||| ||||| || || || || || | ||| Sbjct 791360 TGCTGGTCCGGCGGAATGCCCTCTTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTG 791301 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || | ||| |||| || || || ||||| || || | || || ||||| |||||| Sbjct 791300 TCACAGCTTTCCACCTTTAAGGTGATGGTCTTCCCTGTCAAAGTCTTAACAAAAATCTGC 791241 Query 104558 AT 104559 || Sbjct 791240 AT 791239 >seq33 Length=9343251 Score = 145 bits (160), Expect = 2e-29 Identities = 188/256 (73%), Gaps = 9/256 (4%) Strand=Plus/Plus Query 104309 GAGTCTTTCCATACTTTATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAG 104366 |||| ||| || | | ||||| ||||| || | | | ||| || || || | || | Sbjct 3270447 GAGTGTTTTCACA-TATATTTGCATTCCACCGCGCAAACGAAGGACAAGGTGAAGAGTTG 3270505 Query 104367 ATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAA 104426 | || || || ||||| || |||| | ||| | ||| ||||| |||||||| || |||| Sbjct 3270506 ACTCCTTTTGGATATTGTAATCAGCCAAAGTACGACCATCTTCGAGTTGTTTACCGGCAA 3270565 Query 104427 AAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACAT 104486 |||| || || || || ||||||| ||||||||||| ||||| ||||| || || |||| Sbjct 3270566 AAATAAGTCTTTGCTGGTCAGGAGTGATTCCTTCTTTGTCCTGGATCTTAGCCTTGACAT 3270625 Query 104487 TTTCTACGGTAT---CGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543 | || || || | ||| ||| ||||| || || || ||||| |||||||| || | Sbjct 3270626 TGTCAACTGTGTTTGAGCT---TTCGACCTCAAGAGTTATGGTCTTGCCAGTAAGAGTCT 3270682 Query 104544 TTACAAATATCTGCAT 104559 ||||||| |||||||| Sbjct 3270683 TTACAAAGATCTGCAT 3270698 >seq300 Length=15655920 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| || | || || | || | || ||||| ||||| || || || || | Sbjct 7117908 TCCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGC 7117967 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || || |||||||| | ||| ||||| || || || || | ||| ||||| || || Sbjct 7117968 CAGTGTCCTCCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGG 7118027 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||| || ||||| ||||| || || ||||| || | ||||| | ||| || Sbjct 7118028 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTATCCGATGATTCAAC 7118087 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||||||| || ||||| || || || ||||| || || ||||||||||| Sbjct 7118088 CTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTT 7118138 Score = 104 bits (114), Expect = 5e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| | ||| |||| || ||||| |||||||| ||| Sbjct 3598594 GTCGACTCTTTCTGGATGTTGTAGTCCGCTAGTGTTCGTCCATCTTCAAGTTGTTTCCCA 3598535 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472 ||||| || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 3598534 GCAAATATCAGTCTCTGTTGATCAGGTGGTATCCCCTCTTTGTCCTGTAT 3598485 >seq25 Length=9441222 Score = 138 bits (152), Expect = 3e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || ||||||| || ||| | ||| || || || || || || Sbjct 6394227 GTTGACTCTTTCTGAATGTTGTAGTCAGCTAAAGTCCGACCATCCTCGAGCTGCTTCCCG 6394168 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| ||||||||||| || || || | || |||||||| || ||||| ||||| || Sbjct 6394167 GCAAAGATTAGCCTCTGCTGGTCCGGTTGGATCCCTTCTTTGTCTTGAATTTTTGCCTTC 6394108 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || || | || || ||||| ||||| || ||||| ||||| || Sbjct 6394107 ACATTGTCAATGGTGTCTG-AGCTCTCAACTTCTAGGGTAATGGTTTTACCGGTAAGAGT 6394049 Query 104542 TTTTACAAATATCTGCAT 104559 || || ||||||||||| Sbjct 6394048 CTTGACGAATATCTGCAT 6394031 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| ||| || || | || | || || ||||| || ||| | || ||| Sbjct 6394032 ATACCACCTCTTAACCTGAGAACCAAGTGGAGAGTTGACTCTTTTTGGATACTGTAATCA 6393973 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | || || || || || || || |||||||| || || || || |||||| Sbjct 6393972 GCCAGAGTACGGCCATCCTCGAGCTGCTTCCCGGCAAAAATAAGTCTTTGCTGGTCAGGA 6393913 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGT 104506 || || ||||||||||| || ||||| || || ||||| || | | | || ||| | Sbjct 6393912 GGAATACCTTCTTTATCTTGGATCTTGGCCTTGACATTGTCAATGATGTCTGAGCT---T 6393856 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| |||||||| || |||||||| || ||||| Sbjct 6393855 TCAACCTCAAGGGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 6393803 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/182 (72%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 104309 GAGTCTTTCCATACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGAT 104368 |||||||| || | || | || || ||||| | ||| || || | || | ||||| Sbjct 6393824 GAGTCTTTACAAAGATT-TGCATACCACCTCTCAACCTGAGAACCAAGTGGAGGGTAGAC 6393766 Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||| | || |||| || |||| | ||| | || || ||||| ||||| || | ||| Sbjct 6393765 TCTCTTTGGATATCGTAATCAGCCAAAGTACGGCCATCCTCTAGCTGTTTACCGGAAAAG 6393706 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || ||||| ||||| || |||| ||||||||||| ||||| |||||||| || || || Sbjct 6393705 ATGAGCCTTTGTTGGTCCAGAGGAATTCCTTCTTTCTCCTGTATCTTTGCCTTGACTTTA 6393646 Query 104489 TC 104490 || Sbjct 6393645 TC 6393644 >seq98 Length=1871237 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| | || || | ||||| || || || || || Sbjct 1506708 GTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCG 1506649 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || || ||||| |||||||| || ||||| ||||| || || Sbjct 1506648 GCGAAGATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 1506589 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| | || ||||| || || || ||||| || || || ||| Sbjct 1506588 ACATTGTCGATCGTATCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTT 1506529 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 1506528 TTCACGAAGATCTGCATTTT 1506509 >seq365 Length=14695327 Score = 109 bits (120), Expect = 1e-18 Identities = 236/346 (68%), Gaps = 14/346 (4%) Strand=Plus/Plus Query 268945 TTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAAT 269004 ||| ||||| |||||||| || || || ||||| || || |||||||||||||| | | Sbjct 6185834 TTTCTACGGTTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGTCTCCTCCT 6185893 Query 269005 AGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCT-----ATGAGA 269059 || || || || | || ||||| || | |||| || | |||| || | Sbjct 6185894 CGACACGTACATCAAGGACAACAAAGAGAG----AGACCATCT-CTTCCGCGCAATCGAA 6185948 Query 269060 ACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGC- 269118 || || || || || ||| || | ||||| ||| ||||| ||| | | | Sbjct 6185949 ACCATCCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGACGTGGATCGACGG-ATCTCA 6186007 Query 269119 GCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT- 269177 | ||| || ||| | | || ||||| ||| || |||||||| ||||| || || Sbjct 6186008 GACTTTCGCAGAGCGAATCGTCGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAG 6186067 Query 269178 CTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTA 269237 ||| ||| | || || ||| | |||||| | || || ||||| |||||||| ||||| | Sbjct 6186068 CTTCTGCT-CGATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGATTAACCTTCTCCA 6186126 Query 269238 ACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 |||| ||||| | |||||||| ||||||||||| ||||| || Sbjct 6186127 ACGAGTTGATCTCTCGAGACGAAGGCTTACACTGCGATTTCGCGTG 6186172 >seq154 Length=17905225 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || || |||| || || | ||| || || || ||||| ||| Sbjct 1938480 GTCGACTCTTTCTGAATGTTGTAATCAGCAAGTGTGCGACCATCCTCGAGCTGTTTACCA 1938539 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || |||||||| || || ||||| || || Sbjct 1938540 GCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATCTTGGCCTTC 1938599 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| || | || ||||| | || || ||||| || || | || Sbjct 1938600 ACGTTGTCAATGGTGTCG-GAGCTCTCAACCTCCAAAGTGATGGTCTTCCCGGTCAAGGT 1938658 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1938659 CTTGACGAAAATCTGCAT 1938676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151388988037704