Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq154 113 4e-20 seq300 98.7 8e-16 seq426 96.9 3e-15 seq72 89.7 4e-13 >seq154 Length=17905225 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || || ||||| ||| |||||| |||||||||||||| || Sbjct 1925411 ACCACCACGGAGCCTGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGC 1925470 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | ||||| |||||||| || || | || | ||||||||| ||| || Sbjct 1925471 CAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 1925530 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || |||||||||| || || ||| | | | || |||||||||| ||| Sbjct 1925531 GATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCG--ATGGTATCGGAGCTCTCA 1925588 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| || || || ||||| ||||| |||||||| |||||||| Sbjct 1925589 ACCTCCAGTGTGATTGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCAT 1925638 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || || ||||| ||| ||||| || ||||||||||| || Sbjct 1926095 ACCACCACGGAGCCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGC 1926154 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| |||| |||||| ||| || | || | | |||||||||| || Sbjct 1926155 CAAAGTCCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGG 1926214 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACT 48674 | | |||||| ||| ||||| |||| | ||| | ||||| || | | Sbjct 1926215 AATTCCTTCCTTATCCTGGATTTT-GGCTTTA---ACGTTATCGATGGTGTCAGAGCTTT 1926270 Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| || || || || ||||||||||| || ||||| ||||||||| Sbjct 1926271 CCACCTCGAGGGTGATAGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCATC 1926323 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || || ||||| ||| ||||| || ||||||||||| || Sbjct 1939361 ACCACCACGGAGCCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGC 1939420 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| |||| |||||| ||| || | || | | |||||||||| || Sbjct 1939421 CAAAGTCCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGG 1939480 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACT 48674 | | |||||| ||| ||||| |||| | ||| | ||||| || | | Sbjct 1939481 AATTCCTTCCTTATCCTGGATTTT-GGCTTTA---ACGTTATCGATGGTGTCAGAGCTTT 1939536 Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| || || || || ||||||||||| || ||||| ||||||||| Sbjct 1939537 CCACCTCGAGGGTGATAGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCATC 1939589 >seq300 Length=15655920 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || ||||| || ||||||||||| |||| | | | |||| ||| Sbjct 7117927 ACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCCAGTGTCCTCCCGTCTTCC 7117986 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||||| ||| || | || | |||||||||||| ||| | | |||||||||| Sbjct 7117987 AATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGGGATTCCTTCCTTGTCCTGG 7118046 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || ||| ||| | | | || ||||| | || || ||| | |||||| || || Sbjct 7118047 ATCTTCGCCTTCACATTGTCGATCGTATCCGATGATTCAACCTCTAGTGTTATCGTCTTC 7118106 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || |||||||| ||||||||||| Sbjct 7118107 CCCGTTAGGGTTTTCACGAAAATCTGCAT 7118135 >seq426 Length=14042796 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| || |||||| |||||||||||||||| ||| ||| || | ||||| Sbjct 4567113 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAG-CAAGTGTGCGACCATCCTC 4567171 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || | || | ||||||||| ||| || | | ||||||||| Sbjct 4567172 AAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTG 4567231 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | ||||| || | |||| ||||| || || || || Sbjct 4567232 GATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCGAGGGTAATTGTCTT 4567291 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || |||||||| |||||||| Sbjct 4567292 TCCGGTGAGTGTCTTCACAAAGATCTGCAT 4567321 >seq72 Length=2765197 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| || |||||||| || || | | ||| |||| || Sbjct 416000 CACGAGATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCCGTCTTC 416059 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||| || ||| || | || || |||||||| ||| || | | ||||||||| Sbjct 416060 CAGCTGTTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTG 416119 Query 48637 AATTTTCTGCTTG---ATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || ||| |||| || | || ||||| || | || || ||| | ||||| || Sbjct 416120 GATCTTC-GCTTTCACATTGTCG--ATGGTGTCTGACGATTCGACCTCAAGGGTTATTGT 416176 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || || ||||||||||| ||||||||| Sbjct 416177 CTTCCCCGTTAGGGTTTTCACAAAGATCTGCATC 416210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421247924508638