Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq300 116 2e-21 seq81 114 7e-21 seq365 111 8e-20 seq570 109 3e-19 seq33 109 3e-19 seq43 104 1e-17 seq9 98.7 5e-16 >seq300 Length=15655920 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 10996468 AAAAAATATAACTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 10996409 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 10996408 GCTCTAACCAACTGAGCTAATGGGCC 10996383 Score = 107 bits (118), Expect = 1e-18 Identities = 79/91 (87%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 11446 AAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| ||| ||||||||| | | |||||| | ||||||||||||||||||||||| Sbjct 13629409 AAAATCCAATATTTGGCCCATGCAGGTTTCGAAC-TGCGACCTTCGCGTTATTAGCACGA 13629351 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||||| |||||||||||||||||||| ||| Sbjct 13629350 CGCTCTAACCAACTGAGCTAATGGGCCTTCG 13629320 >seq81 Length=19988679 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 9914540 AAAAAAT---ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 9914596 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 9914597 GCTCTAACCAACTGAGCTAATGGGCC 9914622 Score = 100 bits (110), Expect = 1e-16 Identities = 86/105 (82%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||||||| | | || ||| ||||| ||| ||||| || | | |||||||| |||| Sbjct 5260580 AGGGAAA-ACAAAACAAATGAAAAA--AAAATGGCCTATACAGGTTTCGAACCTGTGACC 5260524 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 5260523 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 5260479 >seq365 Length=14695327 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 203299 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 203240 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 203239 CAACTGAGCTAATGGGCC 203222 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| ||||| || | | |||||||| ||||||||||||||||||||||||| Sbjct 6670799 AAAAACAA--TGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 6670742 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTC 11532 ||| ||||||||||||||| |||| || Sbjct 6670741 TCTAACCAACTGAGCTAATAGGCCATC 6670715 >seq570 Length=12873599 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5526345 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5526404 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 5526405 TGAGCTAATGGGCC 5526418 Score = 96.9 bits (106), Expect = 2e-15 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11446 AAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| ||||| ||||| || | | |||||||| ||||||||||||||||||||||| Sbjct 5341035 AAAAACAAATATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 5341094 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 5341095 GCTCTAACCAACTGAGCTAATAGGCC 5341120 >seq33 Length=9343251 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4884067 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4884126 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 4884127 TGAGCTAATGGGCC 4884140 >seq43 Length=7785828 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| | | ||||| || | ||||||||||| |||||||||||||||||||| Sbjct 851737 AATGAAAAAAAATAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCAC 851678 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 851677 GACGCTCTAACCAACTGAGCTAATAGGCC 851649 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||| || | ||||||||||| ||||||||||||||||||||||||| Sbjct 739108 AAAATAAA--TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 739165 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 739166 TCTAACCAACTGAGCTAATAGGCC 739189 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||| || | ||||||||||| ||||||||||||||||||||||||| Sbjct 742516 AAAATAAA--TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 742573 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 742574 TCTAACCAACTGAGCTAATAGGCC 742597 Score = 86.0 bits (94), Expect = 3e-12 Identities = 67/80 (84%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || || |||| || || |||||||| | | |||||||| ||||||||||||||||||| Sbjct 2909486 AAAAATAAATAAATTTATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGC 2909545 Query 11499 ACGACGCTCTRACCAACTGA 11518 |||||||||| |||||| || Sbjct 2909546 ACGACGCTCTAACCAACAGA 2909565 >seq9 Length=11574597 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11446 AAAAT-CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||| ||||| || | | |||||||| |||||||||||||||||||||||| Sbjct 1252948 AAAATACAAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 1253007 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 1253008 CTCTAACCAACTGAGCTAATAGGCC 1253032 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261489166742488