Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq81 140 5e-29 seq300 122 1e-23 seq52 114 2e-21 seq2 107 3e-19 seq226 104 4e-18 >seq81 Length=19988679 Score = 140 bits (154), Expect = 5e-29 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | ||||||||| | ||||||| Sbjct 8243199 GAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGGCTGGCTCGTAGAGGTGGAG 8243258 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| |||| || | |||||||| | Sbjct 8243259 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 8243318 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||||| ||| || || || ||||||||||| | | ||||| || || Sbjct 8243319 AGAACGTTATCCGTGACGCCGTCACATACACCGAGCACGCCAGGAGGAAGACGGTGACTG 8243378 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||||| |||| || || | || | |||||| | | | |||||||| || Sbjct 8243379 CCATGGACGTCGTTTACGCGCTCAAGAGGCAAGGCAGGACTCTCTATGGTTTCGG 8243433 Score = 140 bits (154), Expect = 5e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | ||||||||| | ||||||| Sbjct 8347603 GAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGGCTGGCTCGTAGAGGTGGAG 8347544 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| |||| || | |||||||| | Sbjct 8347543 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 8347484 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||||| ||| || || || ||||||||||| | | ||||| || || Sbjct 8347483 AGAACGTTATCCGTGACGCCGTCACATACACCGAGCACGCCAGGAGGAAGACGGTGACTG 8347424 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| |||| || || | || | |||||| | | | || ||||| || ||| Sbjct 8347423 CCATGGACGTCGTTTACGCGCTCAAGAGGCAAGGCAGGACTCTCTACGGTTTCGGCGGTT 8347364 Query 16698 AA 16699 || Sbjct 8347363 AA 8347362 >seq300 Length=15655920 Score = 122 bits (134), Expect = 1e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||| ||||||||||| || || |||||||| |||||| | || || ||| Sbjct 13178271 GATAACATTCAAGGTATCACCAAGCCTGCGATTCGTCGTCTTGCTCGTAGAGGAGGCGTC 13178330 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | || || |||| || |||| | | || | |||||||| ||| || Sbjct 13178331 AAGCGTATTAGCGGTCTGATCTACGAGGAGACCAGAGGAGTGCTCAAGATCTTTCTCGAG 13178390 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| || || || ||| || |||||||| | ||||| || || || Sbjct 13178391 AATGTCATCCGCGACGCCGTCACCTACACAGAGCACGCCCGGAGGAAGACGGTGACTGCC 13178450 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | |||||||| |||| | ||||| |||| | || ||||| || ||||| Sbjct 13178451 ATGGACGTTGTCTATGCTCTGAAGAGGCAAGGTCGTACTCTCTACGGTTTCGGCGGTTAA 13178510 Query 16700 TC 16701 || Sbjct 13178511 TC 13178512 >seq52 Length=6559834 Score = 114 bits (126), Expect = 2e-21 Identities = 186/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| |||| ||||||||||| || || || ||||| || Sbjct 982690 GCCAAGAGGCATCGGAAAGTTCTAAGAGACAACATCCAAGGGATTACGAAACCAGCGATT 982749 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || || | | || ||||| |||||| || ||| ||| |||| || |||| | Sbjct 982750 CGCCGACTTGCGAGAAGAGGAGGAGTGAAGCGTATCAGTGGTTTGATCTACGAGGAGACT 982809 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||||||| ||| ||| |||| || || | || || ||| Sbjct 982810 CGCGGCGTTCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTTACTTACACGGAG 982869 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || ||||| || ||||||| |||| || || | || | || ||| Sbjct 982870 CACGCTCGCCGGAAAACTGTGACGGCCATGGACGTCGTTTACGCTCTCAAGAGACAGGGC 982929 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | |||| || || || | |||| Sbjct 982930 CGGACTCTTTACGGATTCGGTGGCTAAT 982957 >seq2 Length=11923138 Score = 107 bits (118), Expect = 3e-19 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || |||||||| ||||| | || || | Sbjct 4179025 GAGACAACATCCAAGGAATCACGAAGCCTGCGATTCGTCGTCTTGCTCGAAGAGGAGGCG 4178966 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| || || ||| |||| ||||| | | | || ||||||||||| ||| Sbjct 4178965 TGAAGCGAATCAGCGGTTTGATCTACGAAGAAACCAGAGGAGTGTTGAAGATCTTTCTCG 4178906 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| || || | || || |||||||| | | ||||| || || Sbjct 4178905 AGAATGTCATCAGAGACGCCGTGACTTACACTGAGCACGCGAGGAGGAAGACGGTGACTG 4178846 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || || || ||||| | ||||| || | | ||||| || || ||| Sbjct 4178845 CGATGGATGTTGTTTACGCTTTGAAGAGGCAAGGACGCACTCTCTATGGATTCGGTGGTT 4178786 Query 16698 AA 16699 || Sbjct 4178785 AA 4178784 >seq226 Length=16133619 Score = 104 bits (114), Expect = 4e-18 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || || | |||||||| | || || | Sbjct 8734463 GAGACAACATCCAGGGAATCACCAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGAGGCG 8734522 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| | || || ||||||| |||| |||| || | |||||||| | Sbjct 8734523 TTAAGCGAATTAGCGGTCTGATCTATGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 8734582 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| || || || || ||||||||||| | ||||| || ||| Sbjct 8734583 AGAATGTCATCCGCGACGCCGTCACTTACACCGAGCACGCACGGAGGAAGACGGTGACCG 8734642 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| | || | ||||| | | | | |||||||| || ||| Sbjct 8734643 CCATGGATGTGGTTTATGCTCTCAAGAGACAAGGAAGGACGCTATATGGTTTCGGCGGTT 8734702 Query 16698 AA 16699 || Sbjct 8734703 AA 8734704 Score = 86.0 bits (94), Expect = 1e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || || | |||| ||| | || || | Sbjct 9396344 GAGACAACATCCAAGGAATCACGAAGCCGGCGATTCGGAGATTGGCCCGTAGAGGAGGCG 9396285 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||||| | || || |||| || |||| |||| || | |||||||| | Sbjct 9396284 TCAAGCGAATTAGCGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 9396225 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| || || || || ||||||||||| | || || || || Sbjct 9396224 AGAACGTCATCCGCGACGCCGTCACTTACACCGAGCACGCACGGAGGAAAACGGTGACGG 9396165 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||||| | || ||||| | || | ||||| | | ||||||| || || Sbjct 9396164 CCATGGATGTGGTTTATGCTCTCAAGAGACAAGGAAGAACTCTTTATGGATTCGG 9396110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074616672134