Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq365 152 6e-32 seq1 100 4e-16 seq33 89.7 6e-13 >seq365 Length=14695327 Score = 152 bits (168), Expect = 6e-32 Identities = 393/588 (67%), Gaps = 8/588 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || |||||||||||||| | || ||||||| | || | |||||||| || || | | Sbjct 6186172 CACGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAT 6186113 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || ||||| || |||||||| || || || ||| || || |||||| Sbjct 6186112 CCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAG 6186053 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCT-CCATAACCGGCGCTGTCATGTA 33481 || ||||| || ||| || || || | | || |||| | | | | | | | | | | Sbjct 6186052 ATACCTTCGAC-GCAGGCGAAAGCGACGATTCGCTCTGCGAAAGTCTGAGAT-CCGTCGA 6185995 Query 33482 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33541 ||||| | ||||| | || ||||| || ||||| || ||||| || || | Sbjct 6185994 TCCACGTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGGA 6185935 Query 33542 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33601 |||||| || | | || || | || || | || || |||| | ||||| ||||| | Sbjct 6185934 AGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTACGTGTCGAGGAGGAGACTGTACATCT 6185875 Query 33602 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33661 |||| || || || ||||| || ||||| || ||||||||| | ||||| | | | Sbjct 6185874 CCGAGTGGATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTT 6185815 Query 33662 GTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 | || || | ||| ||||| || | ||| || || |||||||| ||| || Sbjct 6185814 GGACATC-GGACATGAATCGGGAAGCGAGATTCTCTAGGACGATTCCGTCTGAGGCGGCG 6185756 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATC 33779 || || || | || ||||| || || | | ||| | | || | || || | ||| || Sbjct 6185755 AAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGT-TGAGATTCTCCCAGTC 6185697 Query 33780 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33839 |||| |||| ||| ||||||||| | ||||| || |||||||| ||||| || Sbjct 6185696 GCGACCGTCTTGTGATAGATCGACTTCTTCCGCCGTCCAGAACGATGCCTCGGCCTTCTT 6185637 Query 33840 ATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 ||||| | |||||| | ||||| || || || ||| ||||| Sbjct 6185636 GTACATCTCCCAGATCTGTGGGTATTGAATCGGAAACATACAGAATCT 6185589 >seq1 Length=21755756 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | |||||| | ||| | || | | |||||||| |||||| Sbjct 437884 TCCTCCTTGATCGACATAGCGAGCGGTATCATTGAATACACGTAGCATTGGAACAATACC 437825 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| ||||| || || |||||| | ||||| || || || ||| Sbjct 437824 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 437765 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || ||||| || ||| ||| | || || ||| || || ||||| || Sbjct 437764 AACACCAATACCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAATGTATCATATAT 437705 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 437704 TCCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 437662 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||||| ||| || | |||||||| || || || |||||| | ||| | || || Sbjct 437552 AGTTCCCGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 437493 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | || || || || ||||| | ||| ||||| || || | || | ||| | Sbjct 437492 GTAAGTTTGTATTGCGGATTCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATCA 437434 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||||||||||| || ||||| | ||| | | ||| || | ||| ||| | || | Sbjct 437433 GCATGTGCTGAGGCCTCTCAACTACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAA 437374 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||| || ||||| |||| ||| || || || || || || || Sbjct 437373 GAGTTTTGAATCCAAAGTAGTCATATTCGAAATCGCGATCATAGATGAT 437325 >seq33 Length=9343251 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | ||| || | ||| | || | | |||||||| |||||| Sbjct 5836447 TCCTCCTTGATCGACATAGCGAGCAGTATCATTGAATACACGTAGCATTGGAACAATACC 5836506 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || || || |||||| ||||||| || || || ||| Sbjct 5836507 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTGGCACGGATGTTGTGAACTGA 5836566 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || ||||| || ||| ||| | || || ||| || || ||||| || Sbjct 5836567 AACACCAATACCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAATGTATCATATAT 5836626 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || || ||||||||||| ||||| | ||||| ||||| Sbjct 5836627 TCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 5836668 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||||| || || | |||||||| || || || |||||| | ||| | || || Sbjct 5836781 AGTTCCCGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 5836840 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | || || ||||| ||||| | ||| ||||| || || | || | ||| | Sbjct 5836841 GTAAGTTTGTATTGCGGAGTCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATCA 5836899 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||||||||||| |||||||| | ||| | | ||| || | ||| ||| | || | Sbjct 5836900 GCATGTGCTGAGGCCTTTCAACCACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCAA 5836959 Query 63790 AAGTTTTAAAACCAAAATAGT 63810 |||||| || ||||| |||| Sbjct 5836960 GAGTTTTGAATCCAAAGTAGT 5836980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942231996080