Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq33 98.7 3e-15 seq9 98.7 3e-15 seq1 93.3 1e-13 >seq33 Length=9343251 Score = 98.7 bits (108), Expect = 3e-15 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||| || || || | ||| ||| | || | |||||| |||| | Sbjct 5836650 ATGAAGGATGATAGCATTGAAGGAATATATGATACATTGAAAGAGTGTGCTGTTATCAGC 5836591 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || || || || |||||||| || | ||||| | ||||| || | | |||||||| Sbjct 5836590 AAATCAGCTGGGGGTATTGGTGTTTCAGTTCACAACATCCGTGCCACTGGA-AGTTACAT 5836532 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| ||||| || | |||| Sbjct 5836531 TCGTGGCACAAATGGAACATCTAATGGTATTGTTCCAATGCTACGTGTATTCAATGATAC 5836472 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || ||||| || || ||||| ||| | |||||| Sbjct 5836471 TGCTCGCTATGTCGATCAAGGAGGAGGCAAGAG-AAAGGG 5836433 >seq9 Length=11574597 Score = 98.7 bits (108), Expect = 3e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| ||||| || || ||| ||||| |||||||||||||| ||||| || || Sbjct 3599832 CAGTTCTATGTGGCAGAAGGAGAGCTCTCATGTCAAATGTATCAGCGTTCTGCGGACATG 3599891 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||||||| |||||||| ||||| ||| | || ||||||||| | | ||||| Sbjct 3599892 GGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTAGCTCAC 3599951 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTAC 111878 | |||| || ||||| || || || ||||| || ||||| ||||| ||| Sbjct 3599952 GTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGCTCATGTGTAC 3600008 >seq1 Length=21755756 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||| ||||| || | ||| ||| | || | |||||| |||| | Sbjct 437681 ATGAAGGATGATAGCATTGAGGGAATATATGATACATTGAAAGAGTGTGCTGTTATCAGC 437740 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || || || || |||||||| || | ||||| | |||||| | | | |||||||| Sbjct 437741 AAATCAGCTGGGGGTATTGGTGTTTCAGTTCACAACATCCGTGCAACTGGA-AGTTACAT 437799 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || ||||| | ||||| ||||| ||||| || | |||| Sbjct 437800 TCGTGGTACAAATGGAACATCTAATGGTATTGTTCCAATGCTACGTGTATTCAATGATAC 437859 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 || | || ||||| || || ||||| ||| | |||||| Sbjct 437860 CGCTCGCTATGTCGATCAAGGAGGAGGCAAGAG-AAAGGG 437898 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| || || || || | || ||||| Sbjct 2317172 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAATTCTACGTTGCAAATGGAGAACTTTC 2317230 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || || || ||||||||||| || ||||| ||||| Sbjct 2317231 ATGTCAAATGTATCAGCGCTCAGCCGACATGGGTCTTGGTGTACCATTTAACATTGCCTC 2317290 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||| ||| | ||||||| Sbjct 2317291 ATACTCCCTTCTTACATGCATCCTCGCTCA 2317320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303342945898916