Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq154 86.0 5e-12 seq426 84.2 2e-11 >seq2 Length=11923138 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| ||||| || ||||| || || ||||| | | ||| |||||||| ||| Sbjct 8290340 GACAAAGAAGGTATACCACCTGATCAGCAAAGGCTGATATTTGCCGGTAAGCAACTGGAA 8290399 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| |||| | | ||| ||||| ||||| || ||||| ||||| ||||| | ||||| Sbjct 8290400 GATGGAAGAACCCT-AGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTGTT 8290458 Query 24203 AAGATTGAGAGGAGGA 24218 ||| | ||||| ||| Sbjct 8290459 AAGGCTCAGAGGTGGA 8290474 >seq154 Length=17905225 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || ||||| | ||||| | || || ||| | Sbjct 1925866 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAGACCATTACTTTGGAGGTTGAGAGCTCT 1925807 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| || ||| ||||| ||||| || || || || || Sbjct 1925806 GACACCATCGACAACGTGAAAGCCAAAATTCAAGACAAGGAAGGTATCCCCCCGGACCAG 1925747 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||||||||| || || |||| | | | | |||||| || Sbjct 1925746 CAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACAAT 1925687 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || || || || || ||| |||| || || || Sbjct 1925686 ATCCAGAAGGAGTCAACACTTCACTTGGTCTT 1925655 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || |||||| | || || | || |||||| | Sbjct 1939132 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAGGTCGAGAGCTCT 1939073 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| || ||| ||||| ||||| || || || || || Sbjct 1939072 GACACCATCGACAACGTGAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACCGGACCAG 1939013 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | || ||||||||| || || |||| | | | | |||||| || Sbjct 1939012 CAAAGGTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCTTGGCCGATTACAAT 1938953 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || || || || || ||| |||| || || || Sbjct 1938952 ATCCAGAAGGAGTCAACACTTCACTTGGTTTT 1938921 >seq426 Length=14042796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || ||||||| | ||||||||| | | Sbjct 4567549 ATGCAGATATTCGTGAAGACCCTTACAGGCAAGACGATTACTCTTGAAGTCGAGAGCTCC 4567490 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| |||||||||||||| ||||| || || Sbjct 4567489 GACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCGGACCAG 4567430 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || || ||||| ||||| |||| | | | | ||||| ||| Sbjct 4567429 CAACGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGTACCTTGGCGGATTACAAC 4567370 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || ||||| || |||| || || Sbjct 4567369 ATTCAGAAGGAATCGACCCTTCACTTGGT 4567341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429932656978890