Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_007808.1 Length=49639 Score E Sequences producing significant alignments: (Bits) Value seq88 109 2e-19 >seq88 Length=8365 Score = 109 bits (120), Expect = 2e-19 Identities = 303/462 (66%), Gaps = 2/462 (0%) Strand=Plus/Plus Query 30399 GTAAATACCATCATCACCCCAATACATGAAACTGTTATCAACAACCACTACGGAGTTAGG 30458 ||| ||||| || ||||||||||| | | |||||||||| | ||||||| | | | Sbjct 5371 GTATATACCGTCGTCACCCCAATATAGCACTGTGTTATCAACCAACACTACGCTGG-ACG 5429 Query 30459 AGAAGAG-CAGCCATGCTCACTGATCTTAGTAACAAGGTAGTTGGTTGCAGTGAATCCAT 30517 || | || ||||| || || ||| |||| | |||||| || | || |||| Sbjct 5430 AGCTTACACAACCATGTTCGCTATACTTCTTAACCAAGTAGTTTTCAGCGTTAAACCCAT 5489 Query 30518 AGTCACTACCACCTTGGATCATCCATATGCCGTTAGCTGCCACTACCATTACAGCACTTC 30577 |||||||||||||||| || ||| | ||| || |||| | ||| || | || | Sbjct 5490 AGTCACTACCACCTTGTATACCCCACACGCCATTCTCTGCTATTACTATAAGTTGGCTAC 5549 Query 30578 CGACATTGACCAAATTGATAATGTCGTGGGCGCCTTCGATACGAATAAATCCGCCATCAG 30637 | || | |||| || ||||| ||| ||||| |||| || ||||| || || || | Sbjct 5550 CAACGCTTACCATCTTCTTAATGCCGTATGCGCCATCGAGTCGGATAAAACCACCGTCTG 5609 Query 30638 TATCTACTAGTTCTGGCTCTTCTGTACTGGTAGGATCACCATCTTGGTAGCAGTTCACAA 30697 | | |||| ||||| || | || || || |||||||| ||||| || | | Sbjct 5610 TCGCAACTATATCTGGGGTGTCCTTCGACGTTGGGTCCCCATCTTGATAGCACTTGCCTA 5669 Query 30698 TATCTGCTGGACTATCTACCAATTGGCTAAACAAAATGTAGGAAACAAGTCTAGGTGATT 30757 | || | | | || |||| | ||| ||||| ||||| || | ||| ||||||| Sbjct 5670 TGTCGGTTATGTTGTCAACCAGCTTGCTGAACAAGATGTAAGAGGTCATTCTTGGTGATT 5729 Query 30758 GATCATCACCATCAATAATCTGACCAGAGAAACCAGCATACCAAACCCTGCCAGCGTATT 30817 | || ||||| | | | || ||| ||| |||| | ||||| |||||| | | Sbjct 5730 GGCTGTCTCCATCTAAGACGTCTCCGCTGAAGCCACCATAGAACACCCTACCAGCGAACT 5789 Query 30818 CACAAACTACACTAGCTCCACCTGGGGTTTCATCTTGTGGCA 30859 || || || ||||| || |||| ||| ||||||| Sbjct 5790 GCGCCACAACTGAGGCACCACCAGGTGTTTTATCCTGTGGCA 5831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158721997473356