Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq154 123 2e-23 seq25 123 2e-23 seq33 104 2e-17 seq2 93.3 4e-14 seq426 87.8 2e-12 seq226 87.8 2e-12 >seq154 Length=17905225 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||||||||||| ||| ||||||| | || || ||| ||| Sbjct 1939132 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAGGTCGAGAGCTCT 1939073 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| |||| || |||| ||| ||||| ||||| || ||||| ||||| Sbjct 1939072 GACACCATCGACAACGTGAAAGCCAAAATTCAA-GACAAGGAAGGTATCCCACCGGACCA 1939014 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || |||||||| || | || |||| ||||| ||| ||||||||| Sbjct 1939013 GCAAAGGTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCTTGGCCGATTACAA 1938954 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || || || || || || || || || Sbjct 1938953 TATCCAGAAGGAGTCAACACTTCACTTGGT 1938924 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||||||||||| || |||| || | || || ||| ||| Sbjct 1925866 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAGACCATTACTTTGGAGGTTGAGAGCTCT 1925807 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| |||| || |||| ||| ||||| ||||| || || || ||||| Sbjct 1925806 GACACCATCGACAACGTGAAAGCCAAAATTCAA-GACAAGGAAGGTATCCCCCCGGACCA 1925748 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || |||||||| || | || |||| |||||| ||| ||||||||| Sbjct 1925747 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACAA 1925688 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || || || || || || || || || Sbjct 1925687 TATCCAGAAGGAGTCAACACTTCACTTGGT 1925658 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | ||||| || | ||||| | ||||| ||| ||| Sbjct 1938904 ATGCAAATCTTTGTGAAGACTCTCACCGGCAAGACAATCACCCTTGAAGTCGAGAGCTCT 1938845 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || ||||| || ||| ||||| ||||| || || || || || Sbjct 1938844 GACACTATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 1938785 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || |||| |||||| ||| ||||||||| Sbjct 1938784 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACATTGGCCGATTACAAC 1938725 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || || || Sbjct 1938724 ATTCAGAAGGAGTCGACACTTCACTTGGTCCT 1938693 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | ||||| ||| || Sbjct 1925410 ATGCAGATTTTCGTCAAGACCCTGACCGGGAAGACCATCACCCTTGAAGTCGAGAGCTCC 1925351 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||||||||| || || || Sbjct 1925350 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCTCCAGATCAG 1925291 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || |||| |||||| ||| ||||||||| Sbjct 1925290 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATTACAAC 1925231 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 1925230 ATCCAGAAGGAGTCGACTCTTCACTTGGTCCT 1925199 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||| || ||||||| | || || ||| || Sbjct 1938676 ATGCAGATTTTCGTCAAGACCTTGACCGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 1938617 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||||||||| || || || || || Sbjct 1938616 GACACCATTGACAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 1938557 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || ||||| | || |||| |||||| | | |||||||| Sbjct 1938556 CAGCGTCTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACACTTGCTGATTACAAC 1938497 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || || || || || Sbjct 1938496 ATTCAGAAAGAGTCGACTCTTCACTTGGTCCT 1938465 >seq25 Length=9441222 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || |||||| | ||||||||| |||| || | ||||| ||| || Sbjct 6394031 ATGCAGATATTCGTCAAGACTCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 6394090 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| |||||| ||| |||||||||||||| | ||| ||||| Sbjct 6394091 GACACCATTGACAATGTGAAGGCAAAAATTCAA-GACAAAGAAGGGATCCAACCGGACCA 6394149 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || |||||||| || || | || |||| ||| ||| | | || ||||| Sbjct 6394150 GCAGAGGCTAATCTTTGCCGGGAAGCAGCTCGAGGATGGTCGGACTTTAGCTGACTACAA 6394209 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| ||||| || || || || | || ||| | || | || |||| Sbjct 6394210 CATTCAGAAAGAGTCAACTCTTCACCTTGTTCTACGTCTCCGCGGTGGAA 6394259 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | || || || |||| || | || || || || Sbjct 6393803 ATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACCATAACCCTTGAGGTTGAAAGCTCA 6393862 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||| || || || || ||| || ||| || |||||||| ||||| ||||||| Sbjct 6393863 GACATCATTGA--CAATGTCAAGGCCAAGATCCAAGATAAAGAAGGTATTCCTCCTGACC 6393920 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | ||||||||||||| || || | || |||| || ||| ||| ||||||| Sbjct 6393921 AGCAAAGACTTATTTTTGCCGGGAAGCAGCTCGAGGATGGCCGTACTCTGGCTGATTACA 6393980 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| |||||||| || || || || || || || ||| ||||||| || Sbjct 6393981 GTATCCAAAAAGAGTCAACTCTCCACTTGGTTCTCAGGTTAAGAGGTGG 6394029 >seq33 Length=9343251 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||||||| | || || || |||| || | || || || || Sbjct 3270698 ATGCAGATCTTTGTAAAGACTCTTACTGGCAAGACCATAACTCTTGAGGTCGAAAGCTCA 3270639 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||| | || || || ||| || ||| ||||||||||| || | ||||||| Sbjct 3270638 AACACAGTTGA--CAATGTCAAGGCTAAGATCCAGGACAAAGAAGGAATCACTCCTGACC 3270581 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | ||||||||||||| |||||| | ||||||| ||| ||| ||| ||||||| Sbjct 3270580 AGCAAAGACTTATTTTTGCCGGTAAACAACTCGAAGATGGTCGTACTTTGGCTGATTACA 3270521 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 |||| ||||| || || || || || Sbjct 3270520 ATATCCAAAAGGAGTCAACTCTTCA 3270496 >seq2 Length=11923138 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| || |||||||| || || || | || |||||||| || ||| | ||| Sbjct 8290340 GACAAAGAAGGTATACCACCTGATCAGCAAAGGCTGATATTTGCCGGTAAGCAACTGGAA 8290399 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | || | | |||||||| || || ||||| || || || ||| | ||| || Sbjct 8290400 GATGGAAGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTGTTA 8290459 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| ||||| |||| Sbjct 8290460 AGGCTCAGAGGTGGAA 8290475 >seq426 Length=14042796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| || | || || |||| || || ||| Sbjct 4567777 ATGCAGATCTTCGTGAAGACTCTTACCGGCAAGACAATTACCCTCGAGGTTGAAAGCTCT 4567718 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| || || ||||| || || || || Sbjct 4567717 GACACCATTGACAACGTCA---AGGCCAAGATTCAG-GATAAGGAAGGCATCCCTCCGGA 4567662 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || || ||||| || || | || |||| ||| || ||| ||||| Sbjct 4567661 CCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGGCAGATTA 4567602 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||||||| || || || || || ||||| ||| Sbjct 4567601 CAATATTCAGAAGGAGTCGACCCTTCATTTGGTG 4567568 >seq226 Length=16133619 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 59726 AACCATGCTGTGTTGTTAGTGGGTTACGGAGTACAAGACGGTGTGCCCTACTGGACGTTG 59785 |||||||||||||| ||| ||||| ||||| |||||||||| || |||||| | Sbjct 10225730 AACCATGCTGTGTTAGCAGTTGGTTATGGAGTTGAAGACGGTGTCCCGTACTGGCTTATA 10225789 Query 59786 AAAAACACATGGGGTGATGATTGGGGAGAACATGGATATTTCA 59828 || ||| ||||||| | |||||||||||| |||| || |||| Sbjct 10225790 AAGAACTCATGGGGAGGTGATTGGGGAGACAATGGCTACTTCA 10225832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324630603970