Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq365 208 8e-49 seq154 91.5 2e-13 seq81 86.0 7e-12 seq2 84.2 2e-11 seq426 82.4 9e-11 seq300 82.4 9e-11 seq25 82.4 9e-11 >seq365 Length=14695327 Score = 208 bits (230), Expect = 8e-49 Identities = 506/751 (67%), Gaps = 13/751 (2%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 ||||| || ||||| || || |||||| |||||| |||| ||||| || | | ||| Sbjct 6186340 CTATCCGCAACAAACTCGATATACTGACTCATCAAGTCACGGTTCATCCCCACCA-ACGC 6186282 Query 92984 ACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || || || |||||| || || || ||||||| | ||||| || | ||| Sbjct 6186281 GCAAGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATCGA 6186222 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATA-ATTGTACATTAAGCACGCAAAGT 93101 | || | || | ||| || || | | | | |||| || | |||||| || | Sbjct 6186221 CTTCACGCG-CTCCTCCGTGAGCTTCGTCCTCAACAGAGTGTAGATGAGGCACGCGAAAT 6186163 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 || ||||| ||||||||||| || |||||||| ||| ||| ||||| || || | | Sbjct 6186162 CGCAGTGTAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAATCCAGGCATGA 6186103 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTCC 93220 | || |||||||| ||||| || || | |||| || ||||| || || || |||||||| Sbjct 6186102 GACCACGTTTCTTAAGCCAGAAAATCG-AGCAGAAGCTACCGGAGAAGAAGATACCTTCG 6186044 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 ||| || || || || || || || || ||| | | || | | | |||||| | Sbjct 6186043 ACGCAGGCGAAAGCGACGATTCGCTCTGCGAAAGT--CTGAGAT-CCGTCGATCCACGTC 6185987 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | ||||| | ||||| ||| | ||||| | |||||||| ||| || || | Sbjct 6185986 ATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGGAAGAGATGG 6185927 Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400 |||| ||| | || ||||| || |||| | ||| ||||| || || ||| Sbjct 6185926 TCTCTCTCTTTGTTGTCCTTGATGTACGTGTCGAGGAGGAGACTGTACATCTCCGAGTGG 6185867 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 | |||||| || || || ||||| ||||||||| | || |||| || || || || Sbjct 6185866 ATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGGACATC- 6185808 Query 93461 TGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 || | |||| ||||||| || ||| || || || || || || || || || Sbjct 6185807 GGACATGAATCGGGAAGCGAGATTCTCTAGGACGATTCCGTCTGAGGCGGCGAAGAAGGC 6185748 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG-GATAGAT 93578 | | || || || || ||| ||| | || || || || ||||| ||| || | | Sbjct 6185747 GAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGATTCTCCCAGTCGCGACCG-T 6185689 Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 ||| ||| |||||||||||||| | ||||| |||||||| || || || |||||||| | Sbjct 6185688 CTTGTGATAGATCGACTTCTTCCGCCGTCCAGAACGATGCCTCGGCCTTCTTGTACATCT 6185629 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATAT 93669 |||| || | | | |||||||| ||||| || Sbjct 6185628 CCCAGATCTGTGGGTATTGAATCGGAAACAT 6185598 >seq154 Length=17905225 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||| ||||||||||| | ||| |||||| |||| | | Sbjct 4818854 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 4818911 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| |||||||| |||||| |||||||| Sbjct 4818912 GCGTGGGTTCAAACCCCACTTCTGACATGTTATTATT 4818948 >seq81 Length=19988679 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/109 (78%), Gaps = 6/109 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1828462 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1828405 Query 126325 GGGTTCGAACCCCACACCTGACAAA----TTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| |||| ||| | | |||||||||| Sbjct 1828404 GGGTTCAAATCCCACAGCTGTCAAAAATTTTAGTTTGTAAATTTTTGTT 1828356 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 2412055 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 2412114 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| |||||| |||||| || Sbjct 2412115 TGGGTTCAAATCCCACTTCTGACATATTATTTTT 2412148 >seq2 Length=11923138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 8539634 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 8539691 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| || ||| || || Sbjct 8539692 TTCAAATCCCACAGCTGTCAGATTTTTTTT 8539721 >seq426 Length=14042796 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3122172 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3122115 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 3122114 TTCAAATCCCACAGCTGTCAATTT 3122091 >seq300 Length=15655920 Score = 82.4 bits (90), Expect = 9e-11 Identities = 79/99 (80%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 11715424 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 11715367 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||| || |||||| ||| | || || | || ||||||| Sbjct 11715366 TTCAAATCCCACAGCTGTC-AAGTAGTTTTATAATTTTT 11715329 >seq25 Length=9441222 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 2377450 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 2377393 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 2377392 GGGTTCAAATCCCACAGCTGTCAA 2377369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856359035120