Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq426 141 8e-29 seq154 131 1e-25 seq33 104 2e-17 seq25 93.3 4e-14 >seq426 Length=14042796 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||| || || | || ||||| || |||||||||||||| Sbjct 4567320 ATACCACCACGCAGACGCAGAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCC 4567379 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||| || || || || |||||| |||||||||| || ||||||||| Sbjct 4567380 GCCAAGGTACGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGA 4567439 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| ||||| || | | |||| |||||||| | ||| Sbjct 4567440 GGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCG 4567499 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | ||| ||||| || || || || || || ||||||||| Sbjct 4567500 ACTTCAAGAGTAATCGTCTTGCCTGTAAGGGTCTTCACGAATATCTGCATG 4567550 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | ||| || || | || || || || |||||||||||||| Sbjct 4567094 ACCACCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGC 4567153 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || ||| ||| ||||| || || |||||| ||||||||||||| ||||||||||| Sbjct 4567154 AAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 4567213 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||||| ||||| ||||| || | | |||| |||||| | | || || Sbjct 4567214 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCAC 4567273 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || ||||| || || || ||||| |||||||| Sbjct 4567274 CTCGAGGGTAATTGTCTTTCCGGTGAGTGTCTTCACAAAGATCTGCAT 4567321 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || ||||| | || || || || ||||| |||||||| Sbjct 4567548 ATGCCACCACGCAGACGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCT 4567607 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||| ||||| || || || ||| |||| | | ||| ||||||||| Sbjct 4567608 GCCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGA 4567667 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| || || |||||| || | | |||| |||||| | | ||| Sbjct 4567668 GGGATGCCTTCCTTATCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCA 4567727 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| ||||| || || || |||||||| Sbjct 4567728 ACCTCGAGGGTAATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 4567777 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || || | || || || | || ||||| || || |||||||||||| Sbjct 4568232 ATACCACCACGGAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCG 4568291 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || || ||| |||| || | || || ||||| Sbjct 4568292 GCCAAGGTCCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGT 4568351 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||||| ||| | | || | ||||||| | ||| Sbjct 4568352 GGGATTCCCTCCTTATCCTGAATCTTTGCTTTAACGTTATCGATCGTGTCGGAGCTTTCC 4568411 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || ||||| ||||| || || || |||||||| Sbjct 4568412 ACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 4568461 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 114190 ATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCG 114248 || ||| |||| ||||||| || || ||| | ||| ||| ||||| ||||| |||||| Sbjct 791430 ATCCTTGTTGA-TGTTGTAGTCAGCCAATA-TCCGACCATCCTCAAGCTGTTTGCCAGCG 791373 Query 114249 TAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC 114308 || | || | ||| |||||||| |||||||| ||||| || ||||| || | Sbjct 791372 TAAAGCAGCCTCTGCTGGTCCGGCGGAATGCCCTCTTTATCCTGGATCTTGGCCTTAACG 791313 Query 114309 TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTT 114368 | || | |||||| | ||| || | | ||| | || || || |||| ||| || Sbjct 791312 TTGTCGATGGTGTCACAGCTTTCCACCTTTAAGGTGATGGTCTTCCCTGTCAAAGTCTTA 791253 Query 114369 ACAAAAATCTGCATGGCTT 114387 |||||||||||||||| || Sbjct 791252 ACAAAAATCTGCATGGATT 791234 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| ||||| || | | ||| || || | || || ||||| |||||||||||||| Sbjct 4567776 ATACCACCACGGAGACGAAGAACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCA 4567835 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | |||||| ||| || || || || || || |||| | | || |||||||| Sbjct 4567836 GCT-AGTGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGG 4567894 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || || || ||||| ||||| || | | |||| ||||| | || Sbjct 4567895 TGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTGTCAATAGTGTCCGAACTCTC 4567954 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||| || | ||||| || |||| |||||| || || |||||||| Sbjct 4567955 GACCTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACGAAGATCTGCAT 4568005 >seq154 Length=17905225 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || || | || || || | || || || || ||||||||||||||| Sbjct 1925409 ATACCACCACGGAGCCTGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCG 1925468 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| ||| ||||| || || |||||| ||||||||||||| ||||||||| Sbjct 1925469 GCCAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGA 1925528 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| || | | || | ||| |||| | || Sbjct 1925529 GGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTATCGGAGCTCTCA 1925588 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || |||||||| ||||| || ||||| |||||||| Sbjct 1925589 ACCTCCAGTGTGATTGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCAT 1925638 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||||||| || || ||| ||| || || || || ||| Sbjct 1925214 GTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCA 1925273 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| || || |||||||| ||||||||||| ||||| || Sbjct 1925274 GCGAAGATGAGACGCTGCTGATCTGGAGGAATCCCTTCTTTGTCCTGGATCTTGGCCTTG 1925333 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | ||||| || | ||| | || || |||||||| || Sbjct 1925334 ACGTTGTCAATGGTGTCGGAGCTCTCGACTTCAAGGGTGATGGTCTTCCCGGTCAGGGTC 1925393 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 1925394 TTGACGAAAATCTGCAT 1925410 Score = 120 bits (132), Expect = 3e-22 Identities = 170/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 ||||| ||| || ||||| || | | || || || | || || ||||| ||||||| Sbjct 1938441 ATTTAGAAA--CCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCTTTCTGAATGT 1938498 Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 ||||||| | || ||| ||| || || |||||||||||| ||||||||||||| | Sbjct 1938499 TGTAATCAGCAAGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCT 1938558 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 | || || || |||||||||||||| ||||| || | | |||| |||||||| Sbjct 1938559 GATCTGGGGGGATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGG 1938618 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || |||| || | || || ||||||| || || || ||||||||||| Sbjct 1938619 AGCTCTCAACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTGACGAAAATCTGCAT 1938676 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || || ||||||||||||||| Sbjct 1938675 ATACCACCACGAAGACGGAGGACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAATCG 1938734 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| ||| ||||| || || |||||| ||||||||||||| || || || Sbjct 1938735 GCCAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGG 1938794 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||||| || | | |||| ||||| | | ||| Sbjct 1938795 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCG 1938854 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| ||||| || ||||| || ||||| Sbjct 1938855 ACTTCAAGGGTGATTGTCTTGCCGGTGAGAGTCTTCACAAAGATTTGCAT 1938904 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || || | || || || | || ||||| || || |||||||||||| Sbjct 1926093 ATACCACCACGGAGCCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCG 1926152 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||||| | || || || ||| |||| || | ||| || |||||| Sbjct 1926153 GCCAAAGTCCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGA 1926212 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| || || || ||| | |||| | | || | |||||| | | ||| Sbjct 1926213 GGAATTCCTTCCTTATCCTGGAT-TTTGGCTTTAACGTTATCGATGGTGTCAGAGCTTTC 1926271 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| ||||| || ||||| |||||||| Sbjct 1926272 CACCTCGAGGGTGATAGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 1926322 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || || | || || || | || ||||| || || |||||||||||| Sbjct 1939359 ATACCACCACGGAGCCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCG 1939418 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||||| | || || || ||| |||| || | ||| || |||||| Sbjct 1939419 GCCAAAGTCCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGA 1939478 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| || || || ||| | |||| | | || | |||||| | | ||| Sbjct 1939479 GGAATTCCTTCCTTATCCTGGAT-TTTGGCTTTAACGTTATCGATGGTGTCAGAGCTTTC 1939537 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| ||||| || ||||| |||||||| Sbjct 1939538 CACCTCGAGGGTGATAGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 1939588 >seq33 Length=9343251 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| || |||||||| || ||||||| |||||| ||||||||||| Sbjct 3270502 GTTGACTCCTTTTGGATATTGTAATCAGCCAAAGTACGACCATCTTCGAGTTGTTTACCG 3270561 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || || | || ||||| |||| || ||||||||||| ||||| || Sbjct 3270562 GCAAAAATAAGTCTTTGCTGGTCAGGAGTGATTCCTTCTTTGTCCTGGATCTTAGCCTTG 3270621 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||| | | |||||| || | || | || ||||| || ||||| Sbjct 3270622 ACATTGTCAACTGTGTTTGAGCTTTCGACCTCAAGAGTTATGGTCTTGCCAGTAAGAGTC 3270681 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 3270682 TTTACAAAGATCTGCAT 3270698 >seq25 Length=9441222 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || ||||| ||||||||||| || ||| | ||| ||| ||| || || || || || Sbjct 6394227 GTTGACTCTTTCTGAATGTTGTAGTCAGCTAA-AGTCCGACCATCCTCGAGCTGCTTCCC 6394169 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 || |||| || | ||| |||||||| | || ||||||||||| ||| ||| || Sbjct 6394168 GGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATCCCTTCTTTGTCTTGAATTTTTGCCTT 6394109 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||| | | || || || | ||| | ||||| ||||| ||||| Sbjct 6394108 CACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATGGTTTTACCGGTAAGAGT 6394049 Query 114365 TTTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 6394048 CTTGACGAATATCTGCAT 6394031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420131133192456