Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq365 167 4e-36 >seq365 Length=14695327 Score = 167 bits (184), Expect = 4e-36 Identities = 366/540 (68%), Gaps = 14/540 (3%) Strand=Plus/Plus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||||| || | || ||||||||||||||||| ||||| || ||| ||||| || Sbjct 6185730 TTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTCCTAGAGAATCTC 6185789 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCA 42526 || || | |||||| || || || || |||||||| ||| |||||||| ||||| Sbjct 6185790 GCTTCCCGATTCATGTCCGATGTCCAAGTCTCGGAGGCGCG-TGCTTTCTACGGTTTCCA 6185848 Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 ||| || || ||||| | ||||| ||| ||||| || ||| ||||||||||| Sbjct 6185849 GATCGCGATTGAGAATATCCACTCGGAGATGTACAGTCTCCTCCTCGACACGTACATCAA 6185908 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 ||| | ||| | || || ||| || || || || || || ||| || ||| Sbjct 6185909 GGACAACAAAGAGAGAGACCATCTCTTCCGCGCAATCGAAACCATCCCTTGCGTCGCGAA 6185968 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGGCGAGAGG 42704 ||| || | |||||| | | |||||||| | || | || || |||| ||| | Sbjct 6185969 GAAAGCTCAGTGGGCGATGACGTGGATCGA-----CGGATCTCAGACTTTCGCAGAGCGA 6186023 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 | || || || || |||||| || ||||||||||| || |||| ||| || ||| Sbjct 6186024 ATCGTCGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGCTCGATTTTC 6186083 Query 42765 TGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||||| ||| | | | ||| ||||| ||| | |||||||| ||||| | ||| | Sbjct 6186084 TGGCTTAAG-AAACGTGGTCTCATGCCTGGATTAACCTTCTCCAACGAGTTGATCTCTCG 6186142 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883 ||||| || | || | || || || |||||| ||| | | | ||| || Sbjct 6186143 AGACGAAGGCTTACACTGCGATTTCGCGTGCCTC---ATCTACACTCTGTTGAGGACGAA 6186199 Query 42884 GCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 || | || ||||||| || | | ||| || || ||||| |||||||||| |||||| Sbjct 6186200 GCTCACGGAGGAGCGCGTGAAGTCGATCGTCTGCGACGCCGTCGAGATCGAGAGGGAGTT 6186259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944331668894880