Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq300 116 3e-21 seq72 91.5 1e-13 seq2 82.4 6e-11 >seq300 Length=15655920 Score = 116 bits (128), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || |||| |||||||| |||||||| ||||||||||| ||| Sbjct 7117909 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCC 7117968 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | | |||| ||||||||||| ||||| || ||||| |||||||||||| ||| Sbjct 7117969 AGTGTCCTCCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGGG 7118028 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | | || |||||| || || ||| || | || | |||| | ||||| Sbjct 7118029 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTG---TCGATCGTATCCGATGATTCA 7118085 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| |||||||| || || ||||||||| Sbjct 7118086 ACCTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTTT 7118139 >seq72 Length=2765197 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| ||||||||||| ||||||||| |||||||| || || | | ||| Sbjct 415992 AGACGGAGCACGAGATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGC 416051 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| || || ||||| ||||||| |||||||| ||| || | | || Sbjct 416052 CCGTCTTCCAGCTGTTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCC 416111 Query 34030 TTGTCCATAATTTT---TTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGAC 34085 ||||| || || || | | || || | | || | |||||| || | Sbjct 416112 TTGTCTTGGATCTTCGCTTTCACATTG----TCGATGGTGTCTGACGATTCGACCTCAAG 416167 Query 34086 CGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 |||||||| || || ||||| |||||||||||||| ||||| ||| Sbjct 416168 GGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATCTTT 416213 >seq2 Length=11923138 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| |||| | |||||||||||| || ||| ||||| ||||||||||| || Sbjct 8290473 CCACCTCTGAGCCTTAACACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCT 8290414 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||| |||||| |||||||||||||| | |||||||| Sbjct 8290413 AGGGTTCTTCCATCTTCCAGTTGCTTACCGGCAAATATCAGCCTTTGCTGATC 8290361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397059312591676