Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq365 114 3e-20 >seq365 Length=14695327 Score = 114 bits (126), Expect = 3e-20 Identities = 563/878 (64%), Gaps = 31/878 (4%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || || || || || || | || ||||| ||||| |||||||| | |||| | || ||| Sbjct 6185601 TTTCCGATTCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAGGCATCGTTCTGG 6185660 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACG-TCGTCGACTGGCGCGAGAAACTCAATG 242992 || | || ||||| ||| | | || |||| ||| ||||||| ||||| ||||| | Sbjct 6185661 ACGGCGGAAGAAGTCGATCT-ATCACAAGACGGTCG-CGACTGG---GAGAATCTCAACG 6185715 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 ||| ||| || || |||||||||||| | || | || ||||| | ||| || || || | Sbjct 6185716 ACGGCGAGCGACACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCG 6185775 Query 243053 TGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCA 243110 | | || ||||| || || | || ||| || || || | ||||| || Sbjct 6185776 TCCTAGAGAATCTCGCTTCCCGA--TTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTGC 6185833 Query 243111 ATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTC 243166 || || | || ||| | ||| | ||| |||||| || || || ||| | Sbjct 6185834 TTTCTACGGTTTCCAGATCGCGATTGA--GAA--TATCCACTCGGAGATGTACAGTCTCC 6185889 Query 243167 TTATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGA 243224 | ||||| || || ||| || | ||||| || || | || ||| ||| ||||| Sbjct 6185890 TCCTCGACACG--TACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGCGCAATCGA 6185947 Query 243225 AAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGG--- 243281 || ||| || || || || || | ||||| || |||| | || ||| Sbjct 6185948 AACCATCCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGACGTGGATCGA---CGGATC 6186004 Query 243282 TAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGG 243341 | | | || || ||||| ||||||| | | ||||| |||||||| | || ||||| Sbjct 6186005 TCAGACTTTCGCAGAGCGAATCGTCGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGG 6186064 Query 243342 GAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTC 243401 || |||||| | || || ||||| ||| ||| | |||||||| | | || Sbjct 6186065 TAGCTTCTGCTCGATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGATTAACCTTCTC 6186124 Query 243402 TAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATT 243460 |||||||| ||| ||| ||||| ||| | ||| | |||| ||| || || || Sbjct 6186125 CAACGAGTTGATCTCTCGAGACGAAGGCTTACACTGCGATTTCGCGTG-CCTCATCTACA 6186183 Query 243461 CAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTG 243520 | | | || ||||| | || || || ||| || || || || | Sbjct 6186184 CTCTGTTGAGGACGAAGCTCACGGAGGAGCGCGTGAAGTCGATCGTCTGCGACGCCGTCG 6186243 Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTG 243580 | | ||| | ||| || | |||||||| |||| ||| | | | || |||||| || Sbjct 6186244 AGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTGGGGATGAACCGTG 6186303 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 | | ||| | ||||| ||||| || || || || | |||| |||||||| || | Sbjct 6186304 ACTTGATGAGTCAGTATATCGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTACG 6186363 Query 243641 AGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGA 243700 || || ||| || || |||| | |||||| | || |||||||| || | Sbjct 6186364 GTAAGGTCTACGGTGTGGCTAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAGGGTA 6186423 Query 243701 AAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 |||| ||||| ||||| ||| | || ||||||| ||| Sbjct 6186424 AAACAAACTTTTTCGAGAAGAGAGTTGGTGATTACCAA 6186461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102870984645300