Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq365 116 4e-21 seq52 89.7 6e-13 >seq365 Length=14695327 Score = 116 bits (128), Expect = 4e-21 Identities = 155/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| | || || |||||| | ||| ||||||||||| || ||| Sbjct 6186151 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAATCCAGGCATGAGACCACGTTTC 6186092 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | ||||||||||| || || ||| ||||||||||| || || || || ||||| Sbjct 6186091 TTAAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 6186032 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || ||||| || || | | || | ||| | |||| ||||||||||||| Sbjct 6186031 GCGACGATTCGCTCTGCGAAAGTCTGAGA---TCCGTCGATCCACGTCATCGCCCACTGA 6185975 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 || || ||| ||| || |||| ||| | ||| || Sbjct 6185974 GCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGC 6185940 >seq52 Length=6559834 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 8648 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTC 8707 ||||||||||||| |||| ||||| || || || ||| || || |||||||||||||| Sbjct 2047517 GAATTACCGAGAAGCCTACGGTCTGTTCGCATGTAACGGAATCCTGTTCAACCACGAGTC 2047576 Query 8708 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 8746 || || ||||| | |||||||||| | ||||||||| Sbjct 2047577 GCCGCGACGTGGAGAGAATTTCGTGACGAGGAAGATCAC 2047615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348836105040