Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq25 107 2e-18 seq426 104 2e-17 seq33 98.7 1e-15 seq72 96.9 3e-15 seq154 93.3 4e-14 seq98 93.3 4e-14 >seq25 Length=9441222 Score = 107 bits (118), Expect = 2e-18 Identities = 147/199 (74%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477 ||||||| || |||||||||||||| ||| | ||| || |||||||| || || ||| Sbjct 6394226 TTGACTCTTTCTGAATGTTGTAGTCAGCTAA-AGTCCGACCATCCTCGAGCTGCTTCCCG 6394168 Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TT 138535 | | ||||||| | ||| |||||||| | || ||||||||||| ||| |||||| || Sbjct 6394167 GCAAAGATTAGCCTCTGCTGGTCCGGTTGGATCCCTTCTTTGTC-TTGAATTTTTGCCTT 6394109 Query 138536 TTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAG 138595 |||| || | |||||| | ||| || || | || | |||||||| || |||| Sbjct 6394108 CACATTG-TCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATGGTTTTACCGGTAAGAG 6394050 Query 138596 TTTTTACAAAAATCTGCAT 138614 | || || || |||||||| Sbjct 6394049 TCTTGACGAATATCTGCAT 6394031 >seq426 Length=14042796 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| ||| || || | | | || ||||| ||||||||||| || | Sbjct 4567323 CCACCACGCAGACGCAGAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCCGCC 4567382 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||| || || || | |||| ||||| || ||||||||||| Sbjct 4567383 AAGGTACGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 4567442 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | |||| || | |||||||| ||| || Sbjct 4567443 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTG-TCAATGGTGTCGGAGCTCTCGAC 4567501 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||| || || || || || || || || ||||||||| Sbjct 4567502 TTCAAGAGTAATCGTCTTGCCTGTAAGGGTCTTCACGAATATCTGCATG 4567550 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | | |||||||| ||||||||||| || | Sbjct 4567095 CCACCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAG-C 4567153 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| |||| ||||| || || || || | |||| |||||||| |||||||||| Sbjct 4567154 A-AGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAG 4567212 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || ||||| ||||| ||| || || | | || | |||||| | ||||| Sbjct 4567213 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCA 4567272 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || || || || || ||||| |||||||| Sbjct 4567273 CCTCGAGGGTAATTGTCTTTCCGGTGAGTGTCTTCACAAAGATCTGCAT 4567321 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||||| || ||||| | | | |||||||| ||||| ||||| || Sbjct 4567550 GCCACCACGCAGACGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCTGC 4567609 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| ||||| || || || |||| |||| | | ||| ||||||||||| Sbjct 4567610 CAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 4567669 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| || || ||| | || | || | ||| || | |||||| | || Sbjct 4567670 GATGCCTTCCTTATC-CTGAATCTTGGCCTTGACGTTG-TCAATGGTGTCAGAGCTTTCA 4567727 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | || || || || ||||| || || || |||||||| Sbjct 4567728 ACCTCGAGGGTAATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 4567777 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||| ||| | | | |||||||| || ||||||||||| | ||| | ||||||| Sbjct 4568025 ACTAGATGAAGGGTCGACTCCTTCTGTATGTTGTAGTCAGCGAGAGTTCTACCGTCCTCG 4568084 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 || || || |||| | |||| | | || |||||||| || || || || ||||| | Sbjct 4568085 AGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGG 4568144 Query 138526 ATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 || || || | |||| || | ||| || | ||||||||||| || | ||| || Sbjct 4568145 ATCTTAGCCTTGACATTG-TCGATGGTATCAGAACTCTCCACCTCGAGTGTGATCGTCTT 4568203 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || ||||| || || |||||||| Sbjct 4568204 TCCCGTTAGGGTTTTGACGAAGATCTGCAT 4568233 Score = 82.4 bits (90), Expect = 8e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | ||| | ||| || || | | | ||||| || ||||||||||| || ||| Sbjct 4567779 CCACCACGGAGACGAAGAACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGCT 4567838 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| |||||||| || || |||| | |||| | | || |||||||| || Sbjct 4567839 -AGTGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGG 4567897 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| || | || | |||| ||| || | ||||| | ||| Sbjct 4567898 GATTCCCTCCTTGTC-CTGGATCTTAGCCTTAACGTTG-TCAATAGTGTCCGAACTCTCG 4567955 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | ||||| ||||||| |||||| || || |||||||| Sbjct 4567956 ACCTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACGAAGATCTGCAT 4568005 >seq33 Length=9343251 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||||||| | || | || | ||||||||||||| || ||||| || | Sbjct 3270472 CCACCGCGCAAACGAAGGACAAGGTGAAGAGTTGACTCCTTTTGGATATTGTAATCAGCC 3270531 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || |||||||||||||||| | | || || | || ||||| |||| Sbjct 3270532 AAAGTACGACCATCTTCGAGTTGTTTACCGGCAAAAATAAGTCTTTGCTGGTCAGGAGTG 3270591 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | |||| || || |||| | || || Sbjct 3270592 ATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTG-TCAACTGTGTTTGAGCTTTCGAC 3270650 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| ||||| |||||||| |||||||| Sbjct 3270651 CTCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 3270698 >seq72 Length=2765197 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || ||| ||| || || ||||| |||| Sbjct 416016 GACTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCCGTCTTCCAGCTGTTTTCCGGCG 416075 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || | ||||| |||||||| || || ||||| ||||| ||| || ||| | | Sbjct 416076 AATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACA 416135 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||| || ||||| | || | || || || || || ||||| Sbjct 416136 TTG-TCGATGGTGTCTGACGATTCGACCTCAAGGGTTATTGTCTTCCCCGTTAGGGTTTT 416194 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 416195 CACAAAGATCTGCAT 416209 >seq154 Length=17905225 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| ||| || || || ||||| || || || || | Sbjct 1925445 GACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCG 1925504 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||||||||| |||||||| ||||| ||| || || | Sbjct 1925505 AAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACG 1925564 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| |||| ||| ||||| | || | || || || || ||||| || Sbjct 1925565 TTGTCGATGGTATCGGAGCTCTCAACCTCCAGTGTGATTGTCTTGCCGGTAAGAGTCTTC 1925624 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 1925625 ACAAAGATCTGCAT 1925638 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| ||| || || || |||||||| || || || | Sbjct 1925217 GACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCG 1925276 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || ||||| || ||||||||||| ||| || || | Sbjct 1925277 AAGATGAGACGCTGCTGATCTGGAGGAATCCCTTCTTTGTCCTGGATCTTGGCCTTGACG 1925336 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||| || || | || | || || || ||||| || || Sbjct 1925337 TTGTCAATGGTGTCGGAGCTCTCGACTTCAAGGGTGATGGTCTTCCCGGTCAGGGTCTTG 1925396 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 1925397 ACGAAAATCTGCAT 1925410 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--TCCTCGAGTTGTTTACCGG 138478 ||||| || ||||||||||| || || ||| |||| |||||||| |||||||| | Sbjct 1938483 GACTCTTTCTGAATGTTGTAATCAG-CA-AGTGTGCGACCATCCTCGAGCTGTTTACCAG 1938540 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| || || || || || ||||||||||| ||| || || | Sbjct 1938541 CGAAGATGAGACGCTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATCTTGGCCTTCA 1938600 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||||| ||| ||||| | || | || || || |||| || | Sbjct 1938601 CGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCT 1938660 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 1938661 TGACGAAAATCTGCAT 1938676 >seq98 Length=1871237 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 1506705 GATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCG 1506646 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | ||||| ||||||||||| || ||||| ||||| ||| || || | | Sbjct 1506645 AAGATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACA 1506586 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | || |||| ||||| ||||||| || | || || || || || ||||| Sbjct 1506585 TTG-TCGATCGTATCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTT 1506527 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1506526 CACGAAGATCTGCAT 1506512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258442307360