Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq72 107 1e-18 seq300 93.3 3e-14 seq154 87.8 1e-12 seq426 82.4 5e-11 >seq72 Length=2765197 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || ||||||||||| ||| ||| | | | ||||||| | || Sbjct 416006 ATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCCGTCTTCCAGCTG 416065 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| ||||||| ||||| ||||| ||| |||||||||||||| || || Sbjct 416066 TTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 416125 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || || || || ||| || || | ||| || || || || || Sbjct 416126 CGCTTTCACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTTATTGTCTTCCCCGT 416185 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||| ||||| || ||||| |||| Sbjct 416186 TAGGGTTTTCACAAAGATCTGCATCTTTG 416214 >seq300 Length=15655920 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| || || || || || ||||||||||| || | ||| ||||||| Sbjct 7117926 AACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCCAGTGTCCTCCCGTCTTC 7117985 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||||| || || ||| | |||| ||||| || || || |||||||||||||| Sbjct 7117986 CAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGGGATTCCTTCCTTGTCCTG 7118045 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTT 15145 || || || ||| | || || ||||| | || ||| || |||| || || || | Sbjct 7118046 GATCTTCGCCTTCACATTGTCGATCGTATC-CGATGATTCAACCTCTAGTGTTATCGTCT 7118104 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | || || || ||||| || ||||| ||||| ||| Sbjct 7118105 TCCCCGTTAGGGTTTTCACGAAAATCTGCATTTTT 7118139 >seq154 Length=17905225 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| || ||||| || || || || || || ||||||||| | | | | || Sbjct 1938921 AAAACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCC 1938980 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||| ||| | ||||| | || ||||| ||| || ||||||||||| Sbjct 1938981 TCAAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATACCTTCCTTGTCT 1939040 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||||| ||| || | || || || || | || || || || || |||||| Sbjct 1939041 TGAATTTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCGACCTCCAAAGTGATGGTT 1939100 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| |||||| || || ||||||||| Sbjct 1939101 TTTCCGGTCAAAGTTTTCACGAAGATTTGCATA 1939133 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| || || || || || || ||||||||| | | | | || Sbjct 1925655 AAGACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGACCATCC 1925714 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||| ||| | ||||| | ||| ||||| || || ||||||||||| Sbjct 1925715 TCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATACCTTCCTTGTCT 1925774 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||||| ||| || | || || || || | || || || || |||||||| Sbjct 1925775 TGAATTTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCAACCTCCAAAGTAATGGTC 1925834 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| |||||| || || ||||||||| Sbjct 1925835 TTTCCGGTCAAAGTTTTCACGAAGATTTGCATA 1925867 >seq426 Length=14042796 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | |||| ||||||||| || || || ||||||||||| || | Sbjct 4568007 CCACCACGGAGCCTGAGGACTAGATGAAGGGTCGACTCCTTCTGTATGTTGTAGTCAGCG 4568066 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| |||| || | || || || || | ||||| | || ||||| ||| Sbjct 4568067 AGAGTTCTACCGTCCTCGAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGG 4568126 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| || || || ||| | || || ||||| | | || || Sbjct 4568127 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCGATGGTATCAGAACTCTCCACC 4568186 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || || || || || || ||||| || || || |||||| Sbjct 4568187 TCGAGTGTGATCGTCTTTCCCGTTAGGGTTTTGACGAAGATCTGCATA 4568234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357389221053830