Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq154 113 4e-20 seq72 111 1e-19 seq426 107 2e-18 seq98 95.1 1e-14 seq33 86.0 6e-12 >seq154 Length=17905225 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | || || ||||| ||||| |||||||| |||||| Sbjct 1938903 ATACCACCACGAAGACGCAAAACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCG 1938962 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | ||||| | |||||||||||| Sbjct 1938963 GCCAAGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCCGGT 1939022 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || ||||||||||| ||| | || | || | |||||| || ||| Sbjct 1939023 GGGATACCTTCCTTGTCTTGAATTTTGGCTTTCA-CGTTGTCGATGGTGTCAGAGCTCTC 1939081 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | ||| | ||||| ||||| | |||||| || || |||||||| Sbjct 1939082 GACCTCCAAAGTGATGGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 1939132 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | || || ||||| ||||| |||||||| |||||| Sbjct 1925637 ATACCACCACGAAGACGCAAGACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCG 1925696 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || ||| | ||||| | ||||||||||| Sbjct 1925697 GCCAAGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGG 1925756 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || ||||||||||| ||| | || | || | |||||| || ||| Sbjct 1925757 GGGATACCTTCCTTGTCTTGAATTTTGGCTTTCA-CGTTGTCGATGGTGTCAGAGCTCTC 1925815 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| || || ||||| | |||||| || || |||||||| Sbjct 1925816 AACCTCCAAAGTAATGGTCTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 1925866 >seq72 Length=2765197 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| ||||| || ||||| || || || || ||| || || || || Sbjct 416000 CACGAGATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCCGTCTTC 416059 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || |||||||| ||| |||||||||| ||||||||||| || || ||||| || ||||| Sbjct 416060 CAGCTGTTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTG 416119 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||| | || | |||||| || || ||||| || || || | || || Sbjct 416120 GATCTTCGCTTTCACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTTATTGTCTT 416179 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| ||||| || |||||| Sbjct 416180 CCCCGTTAGGGTTTTCACAAAGATCTGCATC 416210 >seq426 Length=14042796 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| | ||| || || || ||||| || ||||| ||||| Sbjct 4567548 ATGCCACCACGCAGACGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCT 4567607 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || ||||| ||| | ||||| | ||||||||||| Sbjct 4567608 GCCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGA 4567667 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| ||||| ||||| || |||| || | || | |||||| || || Sbjct 4567668 GGGATGCCTTCCTTATCCTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTC 4567726 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| || |||||||| ||||| || || || || ||||| Sbjct 4567727 AACCTCGAGGGTAATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 4567777 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| || || || ||||| | ||| | ||| || | || Sbjct 4567347 TGAAGGGTCGATTCCTTCTGAATGTTGTAATCCGCCAAGGTACGACCATCCTCGAGCTGC 4567406 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | |||||||||||||| || ||||||||||| || || || || Sbjct 4567407 TTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCCTGGATCTTA 4567466 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||||||||| ||||||||| ||||||| ||| ||||| || Sbjct 4567467 GCCTTGACATTGTCAATGGTGTCGGAGCTCTCGACTTCAAGAGTAATCGTCTTGCCTGTA 4567526 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 4567527 AGGGTCTTCACGAATATCTGCAT 4567549 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | |||||||| || || || ||||| || || || || || Sbjct 4568004 ATACCACCACGGAGCCTGAGGACTAGATGAAGGGTCGACTCCTTCTGTATGTTGTAGTCA 4568063 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || || | || ||||| || | ||||| | |||||||||||| Sbjct 4568064 GCGAGAGTTCTACCGTCCTCGAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGT 4568123 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || ||||| || || |||| || | ||| || ||| ||| Sbjct 4568124 GGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCGATGGTATCAGAACTCTCC 4568183 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||| || || ||||| ||||| || || || ||||| Sbjct 4568184 ACCTCGAGTGTGATCGTCTTTCCCGTTAGGGTTTTGACGAAGATCTGCAT 4568233 >seq98 Length=1871237 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || ||||| |||||||| ||||| || || ||| | Sbjct 1506738 CCACCACGGAGACGGAGGACGAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCG 1506679 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | |||||||| ||||||||||| || Sbjct 1506678 AGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAATCGCTGCTGGTCCGGAGGG 1506619 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || || |||| || | || ||||| |||||||| Sbjct 1506618 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTATCGGAGGACTCGACC 1506559 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || || || ||||| ||||| || || || ||||| Sbjct 1506558 TCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1506512 >seq33 Length=9343251 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| | | | || || || || ||||| |||||||||||||| ||||| Sbjct 3270469 ATTCCACCGCGCAAACGAAGGACAAGGTGAAGAGTTGACTCCTTTTGGATATTGTAATCA 3270528 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | |||||| || || | || | || ||||||||| || Sbjct 3270529 GCCAAAGTACGACCATCTTCGAGTTGTTTACCGGCAAAAATAAGTCTTTGCTGGTCAGGA 3270588 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 | || |||||||| || || || || |||| || || |||| || ||| Sbjct 3270589 GTGATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAACTGTGTTTGAGCTTTCG 3270648 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || ||||| || ||||| |||||||| || ||||| Sbjct 3270649 ACCTCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 3270698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999595274480