Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq365 129 9e-25 >seq365 Length=14695327 Score = 129 bits (142), Expect = 9e-25 Identities = 539/838 (64%), Gaps = 21/838 (3%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||||||||| || || |||| | || ||| | ||||| | | || || | Sbjct 6186444 TCTTCTCGAAAAAGTTTGTTTTACCCTGAAGCGAGATTAACTCCATCCAATCAAACGGAT 6186385 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 | ||| ||| ||| | || || || ||| | ||| || || ||||| | Sbjct 6186384 TAGCCACACCGTAGACCTTACCGTACCCAAGCGCACCCAAAAGCCTATCCGCAACAAACT 6186325 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA--GCCTAACGGGGAGCGCTTC 159825 |||| || || |||| |||| ||| ||||||| || || || || ||||| || Sbjct 6186324 CGATATACTGACTCATCAAGTCACGGTTCATCCCCACCAACGCGCAA--GGAAGCGCGTC 6186267 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||| ||||||| |||| |||||||| || ||| || ||| | || || || | Sbjct 6186266 GCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATCGACTTCACGCGCTCCTC 6186207 Query 159886 CCCCGGCTT-GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | |||| | || || || | | ||||||||| || |||||||| | | Sbjct 6186206 CGTGAGCTTCGTCCTCAACAGAGTGT----AGATGAGGCACGCGAAATCGCAGTGTAAGC 6186151 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | ||||| |||||||| ||||||||||| | | | | || ||||||| ||||| | Sbjct 6186150 CTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAATCCAGGCATGAGACCACGTTTCT 6186091 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 | ||||| ||||| | ||| |||| |||| || ||||| || || ||| || || Sbjct 6186090 TAAGCCAGAAAATCG-AGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 6186032 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 || |||| | ||| | ||| | | | | | | ||||| | | ||||| | | Sbjct 6186031 GCGACGATTCGCTCTGCGAAA---GTCTGAGATCCGTCGATCCACGTCATCGCCCACTGA 6185975 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 || ||||| |||| ||| || ||| |||| ||| || | ||| ||| || Sbjct 6185974 GCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGGAAGAGATGGTCTCTCTCTTTG 6185915 Query 160184 ACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATG 160243 |||||||| || | | || |||||| || | ||| | ||| || || Sbjct 6185914 TTGTCCTTGATGTACGTGTCGAGGAGGAGACTGTACATCTCCGAGTGGATATTCTCAATC 6185855 Query 160244 GCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCT 160302 || ||||| || ||||||| ||||||| || || || || || |||| | Sbjct 6185854 GCGATCTGGAAACCGTAGAAAGCACGCGCCTCC-GAGACTTGGACATCGGACATGAATCG 6185796 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | | ||||| | || | ||||| | ||| || ||||| || | ||||| Sbjct 6185795 GGAAGCGAGATTCTCTAGGACGATTCCGTCTGAGGCGGCGAAGAAGGCGAGGACGTGTTT 6185736 Query 160363 GATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT-GTGTCACGTCTTGGGCCA 160421 |||||| |||| |||| | | |||||| || ||||||| | | | ||||||| | | Sbjct 6185735 GATGAAGTGTCGCTCGCCGTCGTTGAG---ATTCTCCCAGTCGCGAC-CGTCTTGTGATA 6185680 Query 160422 AATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 ||| || |||||||| |||| | |||| || | |||||||| ||||||| Sbjct 6185679 GATCGACTTCTTCCGCCGTCCAGAACGATGCCTCGGCCTTCTTGTACATCTCCCAGAT 6185622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795148858637280