Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq98 129 7e-25 seq72 122 1e-22 seq154 107 2e-18 seq426 95.1 1e-14 >seq98 Length=1871237 Score = 129 bits (142), Expect = 7e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 1506702 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAG 1506643 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 1506642 ATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 1506583 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||| ||| || || || || | ||||| || || ||||| || ||||| || Sbjct 1506582 TCGATCGTATCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACG 1506523 Query 46583 AAGATTTGCATTTT 46596 ||||| |||||||| Sbjct 1506522 AAGATCTGCATTTT 1506509 >seq72 Length=2765197 Score = 122 bits (134), Expect = 1e-22 Identities = 161/222 (73%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | || |||||| || || |||||||||| || |||||| | Sbjct 415994 ACGGAGCACGAGATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCC 416053 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||| || |||||||||||||| ||||||||||| | || | | ||||| Sbjct 416054 GTCTTCCAGCTGTTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTT 416113 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||||| || | | | | ||||| |||||| || || | || || Sbjct 416114 GTCTTGGATCTTCGCTTTCACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTTAT 416173 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 || || ||||| || ||||| |||||||| ||||| ||||| Sbjct 416174 TGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATCTTTGC 416215 >seq154 Length=17905225 Score = 107 bits (118), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| || | ||| |||||| ||||||||||| |||| | ||||| | Sbjct 1938917 ACGCAAAACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCC 1938976 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| ||||| | |||||||| | || | | ||||| Sbjct 1938977 ATCCTCAAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATACCTTCCTT 1939036 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 || | ||| || ||| ||| | | | ||||| |||| || || |||| | Sbjct 1939037 GT-CTTGAATTTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTC---TCGACCTCCAAAG 1939092 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||||| || |||| ||||| || ||||||||||| Sbjct 1939093 TGATGGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 1939132 Score = 105 bits (116), Expect = 8e-18 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || |||||| ||||| |||||||| | ||||| || | || || Sbjct 1925885 CACTAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCATCTTC 1925944 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||| |||||||| ||||| | ||||||||| | || | | ||||||||| Sbjct 1925945 GAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1926004 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGG 46559 |||||| ||| | ||| | | | ||||| ||| || || |||| ||||| | Sbjct 1926005 GATCTTAGCCTTCA-CGTTGTCGATGGTGTCAGAACTC---TCGACCTCCAAAGTGATCG 1926060 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| || ||||| || ||||| ||||| Sbjct 1926061 TCTTTCCCGTTAGGGTTTTGACGAAGATCTGCAT 1926094 Score = 105 bits (116), Expect = 8e-18 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || |||||| ||||| |||||||| | ||||| || | || || Sbjct 1939151 CACTAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCATCTTC 1939210 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||| |||||||| ||||| | ||||||||| | || | | ||||||||| Sbjct 1939211 GAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1939270 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGG 46559 |||||| ||| | ||| | | | ||||| ||| || || |||| ||||| | Sbjct 1939271 GATCTTAGCCTTCA-CGTTGTCGATGGTGTCAGAACTC---TCGACCTCCAAAGTGATCG 1939326 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| || ||||| || ||||| ||||| Sbjct 1939327 TCTTTCCCGTTAGGGTTTTGACGAAGATCTGCAT 1939360 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| || | ||| |||||| ||||||||||| |||| | ||||| | Sbjct 1925651 ACGCAAGACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGACC 1925710 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| ||||| | ||||||||| | || | | ||||| Sbjct 1925711 ATCCTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATACCTTCCTT 1925770 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 || | ||| || ||| ||| | | | ||||| |||| || || |||| | Sbjct 1925771 GT-CTTGAATTTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTC---TCAACCTCCAAAG 1925826 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| || || |||| ||||| || ||||||||||| Sbjct 1925827 TAATGGTCTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 1925866 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| |||| | ||||| | || || |||||||| || ||||| Sbjct 1938713 CTCCTTCTGAATGTTGTAATCGGCCAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 1938772 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | || ||||||||| |||||| ||| | ||| Sbjct 1938773 GATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 1938831 Query 46522 CGCCACC-GTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | || ||||| |||| || || || | ||||| || ||||| || || || | Sbjct 1938832 TGTCAATAGTGTCAGAGCTC---TCGACTTCAAGGGTGATTGTCTTGCCGGTGAGAGTCT 1938888 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||||||||| Sbjct 1938889 TCACAAAGATTTGCAT 1938904 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| | ||||| | || ||||||||||| || ||||| Sbjct 1925219 CTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAA 1925278 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | || |||||| |||||| ||||| ||| Sbjct 1925279 GATGAGACGCTGCTGATCTGGAGGAATCCCTTCTTTGTCCTGGATCTTGGCCTTGA-CGT 1925337 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| || || || | |||||||| || || ||||| || | Sbjct 1925338 TGTCAATGGTGTCGGAGCTC---TCGACTTCAAGGGTGATGGTCTTCCCGGTCAGGGTCT 1925394 Query 46578 TAACAAAGATTTGCAT 46593 | || || || ||||| Sbjct 1925395 TGACGAAAATCTGCAT 1925410 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| |||| | ||||| | || || |||||||| || ||||| Sbjct 1925447 CTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 1925506 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 1925507 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 1925565 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | || || |||| || || |||| ||||| || ||||| || || || | Sbjct 1925566 TGTCGATGGTATCGGAGCTC---TCAACCTCCAGTGTGATTGTCTTGCCGGTAAGAGTCT 1925622 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||| ||||| Sbjct 1925623 TCACAAAGATCTGCAT 1925638 >seq426 Length=14042796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || ||||| || | ||| || || | || ||||||||||| ||||| || Sbjct 4567814 CTCTTTCTGAATGTTGTAATCAGCTAGTGTACGACCATCCTCGAGCTGCTTTCCGGCAAA 4567873 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||||| | || | | |||||||||| |||||| ||| | ||| Sbjct 4567874 GATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTAGCCTT-AACGT 4567932 Query 46522 CG-CCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| || || |||| ||||||||||| || |||| |||| Sbjct 4567933 TGTCAATAGTGTC---CGAACTCTCGACCTCCAAAGTGATGGTTTTTCCAGTCAAAGTTT 4567989 Query 46578 TAACAAAGATTTGCAT 46593 |||| ||||| ||||| Sbjct 4567990 TAACGAAGATCTGCAT 4568005 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||||||||| ||| | || |||||| || |||||||| || | Sbjct 4567549 TGCCACCACGCAGACGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCTG 4567608 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | || || |||||||| |||||||| ||||| | ||||||||| | | Sbjct 4567609 CCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAG 4567668 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGAT 46540 | | || ||||| ||| ||||| ||||| ||| | | | ||||| ||| | Sbjct 4567669 GGATGCCTTCCTTATCCTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCT---T 4567724 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | || || || ||||| || || || || || ||||| ||||| Sbjct 4567725 TCAACCTCGAGGGTAATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 4567777 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| | ||||| | |||| ||||||||||| ||||| || Sbjct 4568042 CTCCTTCTGTATGTTGTAGTCAGCGAGAGTTCTACCGTCCTCGAGCTGCTTTCCGGCAAA 4568101 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||||| | || | | ||||||||| |||||| ||||| | Sbjct 4568102 GATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACATT 4568161 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || ||| ||||| || | ||||| || || ||||| || ||||| Sbjct 4568162 GTCGATGGTATCAGAACTC---TCCACCTCGAGTGTGATCGTCTTTCCCGTTAGGGTTTT 4568218 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 4568219 GACGAAGATCTGCAT 4568233 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| || | || ||||| | || || |||||||| || ||||| Sbjct 4567130 CTCCTTCTGAATGTTGTAATCAGCAAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 4567189 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||| |||||| ||||| ||| Sbjct 4567190 GATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 4567248 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| || | || || || || || || || || | Sbjct 4567249 TGTCAATGGTGTCAGAGCTC---TCCACCTCGAGGGTAATTGTCTTTCCGGTGAGTGTCT 4567305 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||| ||||| Sbjct 4567306 TCACAAAGATCTGCAT 4567321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565233892223760