Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq154 105 5e-18 seq33 89.7 4e-13 seq426 82.4 5e-11 >seq154 Length=17905225 Score = 105 bits (116), Expect = 5e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCT--TTTTGTATATTATAATCGG 39550 || || || | ||||| ||||| || ||||| | || || || ||||| ||||||| Sbjct 1925640 CCACCACGAAGACGCAAGACCAAGTG--AAGTGTTGACTCCTTCTGGATATTGTAATCGG 1925697 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 |||| ||| |||| || | || || ||| | || || || | |||||| |||| || Sbjct 1925698 CCAAGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGGG 1925757 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCC 39669 | | ||||| ||||| ||||| ||| | ||| | | | ||||| | ||| || Sbjct 1925758 GGATACCTTCCTTGTCTTGAATTTTGGCTTTCA-CGTTGTCGATGGTGTCAGAGCTCTCA 1925816 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||||||||| || || || || |||||||| |||||||| ||||| Sbjct 1925817 ACCTCCAAAGTAATGGTCTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 1925866 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCT--TTTTGTATATTATAATCGG 39550 || || || | ||||| ||||| || ||||| | || || || ||||| ||||||| Sbjct 1938906 CCACCACGAAGACGCAAAACCAAGTG--AAGTGTTGACTCCTTCTGGATATTGTAATCGG 1938963 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 |||| |||| |||| || | || || ||| | || || || | ||||| |||| | Sbjct 1938964 CCAAGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCCGGTG 1939023 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCC 39669 | | ||||| ||||| ||||| ||| | ||| | | | ||||| | ||| || Sbjct 1939024 GGATACCTTCCTTGTCTTGAATTTTGGCTTTCA-CGTTGTCGATGGTGTCAGAGCTCTCG 1939082 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || ||||| || || |||||||| |||||||| ||||| Sbjct 1939083 ACCTCCAAAGTGATGGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 1939132 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | ||| ||||| || || || ||||| || Sbjct 1938450 CCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCTTTCTGAATGTTGTAATCAGCA 1938509 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||||| || | || || | |||||||||||| | ||| Sbjct 1938510 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGATCTGGGGGG 1938569 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || || | ||| | | | ||||| | ||| || || Sbjct 1938570 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTCTCAAC 1938628 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || || || || ||||| |||||||| Sbjct 1938629 CTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTGACGAAAATCTGCAT 1938676 >seq33 Length=9343251 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||||||| || || | || | ||| || ||||| ||||| ||||| ||| Sbjct 3270472 CCACCGCGCAAACGAAGGACAAGGTGAAGAGTTGACTCCTTTTGGATATTGTAATCAGCC 3270531 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| || | |||||| ||| ||||||| | | ||||| || | | Sbjct 3270532 AAAGTACGACCATCTTCGAGTTGTTTACCGGCAAAAATAAGTCTTTGCTGGTCAGGAGTG 3270591 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || | | | ||||||| || |||||| || Sbjct 3270592 ATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAACTGTGTTTGAGCTTTCGACC 3270651 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || || || || | ||| ||||| ||||||||||| Sbjct 3270652 TCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 3270698 >seq426 Length=14042796 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||||| |||||||| | || || || || ||||| ||||| || Sbjct 4567550 GCCACCACGCAGACGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCTGC 4567609 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || |||| || | || || ||| | || || || | |||||| |||| || Sbjct 4567610 CAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 4567669 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCA 39670 | |||||| || || || || || | ||| | | || |||| | |||||| | Sbjct 4567670 GATGCCTTCCTTATCCTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTCAA 4567728 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | |||||||| || || || | ||| || |||||||||||||| Sbjct 4567729 CCTCGAGGGTAATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 4567777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347366898984254