Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq365 223 3e-53 seq98 136 4e-27 seq72 127 2e-24 seq154 118 1e-21 seq300 100 3e-16 seq426 98.7 1e-15 >seq365 Length=14695327 Score = 223 bits (246), Expect = 3e-53 Identities = 464/681 (68%), Gaps = 14/681 (2%) Strand=Plus/Minus Query 132816 CTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGC--CGTTGC 132873 |||||| |||| |||||| |||||| | | |||||| || | | || ||| | Sbjct 6186251 CTCGATCTCGACGGCGTCGCAGACGATCGACTTCACGCGCTCCTCCGTGAGCTTCGT--C 6186194 Query 132874 ACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATG 132933 ||| | || | || | ||| || || ||||| || ||||| ||||| | || || Sbjct 6186193 CTCAACAGAGTGTAGATGAGGCACGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATC 6186134 Query 132934 AGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCG 132993 | |||||| ||| || || || |||||||| || ||||| || ||||| || || | | Sbjct 6186133 AACTCGTTGGAGAAGGTTAATCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATCGAG 6186074 Query 132994 GCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCG 133053 ||| || || || ||||||| || |||||| |||||||| || | ||||| || Sbjct 6186073 CAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAAGCGACGATTCGCTCTGCG 6186014 Query 133054 AACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGC 133111 || || || | | | ||||||| || |||||| | || |||||| | |||| Sbjct 6186013 AAAGT--CTGAGATCC-GTCGATCCACGTCATCGCCCACTGAGC--TTTCTTCGCGACGC 6185959 Query 133112 ACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGG 133171 | || || |||||||| ||| || | | || | |||||| | | ||| | Sbjct 6185958 AAGGGATGGTTTCGATTGCGCGGAAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTACG 6185899 Query 133172 TGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGT 133231 |||||| |||| ||||| |||||||| | ||||| || ||||| || || |||| Sbjct 6185898 TGTCGAGGAGGAGACTGTACATCTCCGAGTGGATATTCTCAATCGCGATCTGGAAACCGT 6185839 Query 133232 A-AAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCG 133290 | ||||||| ||||||| || || || || ||| || | ||||| || Sbjct 6185838 AGAAAGCAC-GCGCCTCCGAGACTTGGACATCGGACATGAATCGGGAAGCGAGATTCTCT 6185780 Query 133291 TTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCG 133350 |||||| ||||| ||||||||| ||||| || ||||| |||||||| || |||||| Sbjct 6185779 AGGACGATTCCGTCTGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTCG 6185720 Query 133351 TTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTC 133410 |||||| | |||||||||||| ||| | || || || || || || | ||| Sbjct 6185719 CCGTCGTTGAGATTCTCCCAGTCGCGACCGTCTTGTGATAGATCGACTTCTTCCGCCGTC 6185660 Query 133411 CAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAA 133470 || ||||| |||||||| || |||||||| ||| || | | ||||| || ||||| Sbjct 6185659 CAGAACGATGCCTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGAAAC 6185600 Query 133471 AT-CACAAACCGGCGGGGGTT 133490 || || || | | | |||||| Sbjct 6185599 ATACAGAATCTGTCAGGGGTT 6185579 >seq98 Length=1871237 Score = 136 bits (150), Expect = 4e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| ||||| || ||||| || || |||||| |||| |||||| | Sbjct 1506508 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTC 1506567 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | | || | || |||| ||||| || ||||| || | || Sbjct 1506568 CTCCGATACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCGGA 1506627 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | || | ||| || || ||||| || |||| ||||||||| |||||| Sbjct 1506628 CCAGCAGCGATTGATCTTCGCCGGGAAGCAGCTCGAGGACGGACGCACCCTCGCCGACTA 1506687 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| |||||| ||||||| || | || || ||| Sbjct 1506688 CAACATCCAGAAGGAATCGACGCTTCACCTCGTCCTCCGT 1506727 >seq72 Length=2765197 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || ||||| || ||||| || || || ||| | || ||||| | Sbjct 416213 AAAGATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACAATAACCCTTGAGGTCGAATC 416154 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | | |||| || |||| ||||| || ||||| || | || Sbjct 416153 GTCAGACACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGA 416094 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | || | ||| || ||||||||||| |||| |||||| ||| |||||| Sbjct 416093 CCAGCAGCGATTGATATTCGCCGGAAAACAGCTGGAAGACGGGCGCACACTCGCCGACTA 416034 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || ||||| ||||||| ||| | ||||| ||| Sbjct 416033 CAACATACAGAAGGAGTCGACGCTTCATCTCGTGCTCCGT 415994 >seq154 Length=17905225 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| | || |||||| | || Sbjct 1925410 ATGCAGATTTTCGTCAAGACCCTGACCGGGAAGACCATCACCCTTGAAGTCGAGAGCTCC 1925351 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| |||||||| || ||||| | || || Sbjct 1925350 GACACCATTGACAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCTCCAGATCA 1925292 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || || | |||||| | ||| ||||| Sbjct 1925291 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATTACAA 1925232 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| || || ||||| || ||| Sbjct 1925231 CATCCAGAAGGAGTCGACTCTTCACTTGGTCCTCCGT 1925195 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| || |||||| |||| || || | | Sbjct 1926322 ATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCT 1926263 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||||| ||||||| || || || |||||||| | || || Sbjct 1926262 GACACCATCGATAACG-TTAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCGGATCA 1926204 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| || || ||| |||| |||| || || | ||| ||||| Sbjct 1926203 GCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGGACTTTGGCCGATTACAA 1926144 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| |||||| | || || || ||||| || Sbjct 1926143 CATCCAGAAGGAATCCACCCTTCACTTGGTCCT 1926111 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| || |||||| |||| || || | | Sbjct 1939588 ATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCT 1939529 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||||| ||||||| || || || |||||||| | || || Sbjct 1939528 GACACCATCGATAACG-TTAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCGGATCA 1939470 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| || || ||| |||| |||| || || | ||| ||||| Sbjct 1939469 GCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGGACTTTGGCCGATTACAA 1939410 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| |||||| | || || || ||||| || Sbjct 1939409 CATCCAGAAGGAATCCACCCTTCACTTGGTCCT 1939377 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||||||||| | || |||||| | | Sbjct 1939132 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAGGTCGAGAGCTCT 1939073 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| ||||| | ||||| || || || || | ||||| Sbjct 1939072 GACACCATCGACAACG-TGAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACCGGACCA 1939014 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| ||||| ||||| || || | |||||| | ||| ||||| Sbjct 1939013 GCAAAGGTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCTTGGCCGATTACAA 1938954 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || || ||||| ||||| Sbjct 1938953 TATCCAGAAGGAGTCAACACTTCACTTGGTTTTGCGT 1938917 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || ||||| || || ||||| | || |||||| | Sbjct 1926094 ATGCAGATCTTCGTCAAAACCCTAACGGGAAAGACGATCACTTTGGAGGTCGAGAGTTCT 1926035 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| |||||||| || | ||||| Sbjct 1926034 GACACCATCGACAACG-TGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCA 1925976 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || || ||||| || || | || || || |||||||| Sbjct 1925975 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACTCTTGCGGACTACAA 1925916 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| ||||| |||| || ||| | ||||| Sbjct 1925915 CATCCAGAAGGAGTCGACCCTTCATCTAGTGCT 1925883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || ||||| || || ||||| | || |||||| | Sbjct 1939360 ATGCAGATCTTCGTCAAAACCCTAACGGGAAAGACGATCACTTTGGAGGTCGAGAGTTCT 1939301 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| |||||||| || | ||||| Sbjct 1939300 GACACCATCGACAACG-TGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCA 1939242 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || || ||||| || || | || || || |||||||| Sbjct 1939241 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACTCTTGCGGACTACAA 1939182 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| ||||| |||| || ||| | ||||| Sbjct 1939181 CATCCAGAAGGAGTCGACCCTTCATCTAGTGCT 1939149 >seq300 Length=15655920 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| ||||| || ||||| || || || || | || || || | Sbjct 7118139 AAAAATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACGATAACACTAGAGGTTGAATC 7118080 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG- 38358 | || | | | | | || | || |||| ||||| || ||||| ||||||| Sbjct 7118079 ATCGGATACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAAT-CCCGCCGG 7118021 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || ||||| || || | ||| || || || |||| |||| | | || || || | Sbjct 7118020 ATCAGCAGCGACTGATCTTCGCCGGAAAGCAATTGGAAGACGGGAGGACACTGGCGGATT 7117961 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| |||||| ||||||| || ||||| || ||| ||||||| || Sbjct 7117960 ACAACATCCAGAAGGAATCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGG 7117909 >seq426 Length=14042796 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || |||||| | || || || | || Sbjct 4568461 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 4568402 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||||| ||| || | || || |||||||| || | || || Sbjct 4568401 GACACGATCGATAACG-TTAAAGCAAAGATTCAGGATAAGGAGGGAATCCCACCGGATCA 4568343 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || |||| || | ||| || || |||||||| || | || ||| | ||| ||||| Sbjct 4568342 GCAAAGGCTTATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGGACCTTGGCCGATTACAA 4568283 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| |||||| | || || || ||||| || Sbjct 4568282 CATCCAGAAGGAATCCACCCTCCACTTGGTCCT 4568250 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || ||||||||| | | || || | Sbjct 791239 ATGCAGATTTTTGTTAAGACTTTGACAGGGAAGACCATCACCTTAAAGGTGGAAAGCTGT 791298 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||| | || |||| || |||||||| ||||| | ||||| Sbjct 791299 GACACCATCGACAACG-TTAAGGCCAAGATCCAGGATAAAGAGGGCATTCCGCCGGACCA 791357 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| ||||||| ||||||||||| || || | || | | |||||||| Sbjct 791358 GCAGAGGCTGCTTTACGCTGGCAAACAGCTTGAGGATGGTCGGATATTGGCTGACTACAA 791417 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| | ||||| ||||| | || ||||| |||||| Sbjct 791418 CATCAACAAGGATGCGACCATCCACTTGGTACTGCGT 791454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168811121920