Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 125 9e-24 seq365 122 1e-22 seq570 107 2e-18 seq9 95.1 2e-14 >seq2 Length=11923138 Score = 125 bits (138), Expect = 9e-24 Identities = 290/428 (68%), Gaps = 17/428 (4%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | ||| ||||| || | || | |||||| |||| | || | | Sbjct 5955713 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAATACCAGTGTTACCTT--CGA 5955656 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | ||||||||||| || | ||||| || | ||| ||||| | ||||||||| || Sbjct 5955655 ATCCATCCATCTCAGTTAGCAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCT---C 5955599 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| || | | | |||| | || || |||||||| ||||| | ||||| |||| Sbjct 5955598 CACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGC 5955539 Query 16093 ATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | || ||||| || ||| ||| ||||| || || | ||| || ||||| Sbjct 5955538 AAGGAGCGTTTTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTGGAGGCACCAACACCG 5955480 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | | | | || | || ||| || ||| || |||||| Sbjct 5955479 ACAAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACC 5955421 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||||||| || | ||| || || || ||||| || ||| |||||| |||| Sbjct 5955420 AGCAATGGCTTTCGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATGAGGAGAACACC 5955361 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | || ||| |||| ||| || | ||||||| || | ||| ||||| ||||||| Sbjct 5955360 TTTCGGGATCCTGGCACCAACCGCAGTGAATCTCTCTGGCTTCTTCAGAAACTCCACAA- 5955302 Query 16331 CTCTTCCA 16338 |||||| Sbjct 5955301 --CTTCCA 5955296 >seq365 Length=14695327 Score = 122 bits (134), Expect = 1e-22 Identities = 377/577 (65%), Gaps = 21/577 (4%) Strand=Plus/Plus Query 101746 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 101805 ||||||| | |||| || | | || ||||| ||||||| | || |||||||| Sbjct 6185587 ACAGATTCTGTATGTTTCCGATTCAATACCCACAGATCTGGGAGATGTACAAGAAGGCC- 6185645 Query 101806 AAATGAGTAAT-----TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTG 101860 ||| || ||||| || ||||| || ||||| ||| | || ||| || Sbjct 6185646 ----GAGGCATCGTTCTGGACGGCGGAAGAAGTCGATCTATCACAAGACGGTCGCGACTG 6185701 Query 101861 GAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGG 101920 | ||| ||| || || || | ||||| ||| || |||| || ||||| || | Sbjct 6185702 GGAGAATCTCAACGACGGCGAGCGACACTTCATCAAACACGTCCTCGCCTTCTTCGCCGC 6185761 Query 101921 GTCCGATGGAATTGTTTTTGAGAATATCAATAACAACTT--TG-CTGATGAGGTGCAATC 101977 || || ||||| || | |||||| || | | || || | |||| | ||| Sbjct 6185762 CTCAGACGGAATCGTCCTAGAGAATCTCGCTTCCCGATTCATGTCCGATG---TCCAAGT 6185818 Query 101978 CTCTGAAGCGAGATCTTTCTATGCGTATCAATGTCATAAT-GAAATGGTGCATGGGGAGA 102036 ||| || ||| | ||||||| | || || | || || || | | || ||||| Sbjct 6185819 CTCGGAGGCGCGTGCTTTCTACG-GTTTCCAGATCGCGATTGAGAATATCCACTCGGAGA 6185877 Query 102037 CATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTG 102096 |||||| ||| | |||| ||| || ||||| |||| | || ||||| Sbjct 6185878 TGTACAGTCTCCTCCTCGACACGTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCC 6185937 Query 102097 AAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTG 102156 || ||| |||| | || || | |||||||| | ||||| |||| |||| | | Sbjct 6185938 GCGCAATCGAAACCATCCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGACGTGGATCG 6185997 Query 102157 ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCT 102216 | | || | | || || |||||| || |||| || || || || || ||||||| Sbjct 6185998 ACGGA---TCTCAGACTTTCGCAGAGCGAATCGTCGCTTTCGCCTGCGTCGAAGGTATCT 6186054 Query 102217 TCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTC 102276 ||||||| ||| ||||||| | |||| ||||| ||||| || ||||||||||| || Sbjct 6186055 TCTTCTCCGGTAGCTTCTGCTCGATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGAT 6186114 Query 102277 TCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 | ||||||||||||| | |||||||| ||||| || Sbjct 6186115 TAACCTTCTCCAACGAGTTGATCTCTCGAGACGAAGG 6186151 >seq570 Length=12873599 Score = 107 bits (118), Expect = 2e-18 Identities = 312/471 (66%), Gaps = 11/471 (2%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| | || || | | | |||| |||||| | ||| | |||||| || Sbjct 6309226 CGATCAAATCTTCCAGGCCTCAACAACGCGGAATCAAGAACATCCGGTCTATTCGTAGCT 6309167 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 || | |||| | ||| | | | | ||| ||||||||||| ||||| | ||||||| Sbjct 6309166 GCCAAAACAATCACACCAGAGTTGCCAGAAAACCCATCCATCTCAGTCAACAACTGGTTA 6309107 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC--ACCAGCACTGCGTTGCTTTCCCA 16062 || || ||||||| |||||||| || | | || |||||| | | ||| |||| | Sbjct 6309106 ATCGTCTGTTCCCTCTCATCATTTCCT--CCTCCCATACCAGCTCCTCTCTGCCTTCCAA 6309049 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGC-GAGCGACTTCAAAG 16121 | || ||||||||||||||||| || ||||| || | ||| | ||| || || Sbjct 6309048 CAGCGTCAATCTCATCAATGAACACAATGCAAGG-CGCTTTAGACTTAGCCTTCTCGAAC 6308990 Query 16122 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | ||||| || || || | || || ||||| ||||| | ||||||||| | | || | Sbjct 6308989 AAATCCC-TA-ACTCTAGACGCACCAACACCCACAAAAAGCTCCACAAACTCCGAAGCCG 6308932 Query 16180 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 || | ||| || ||| | ||| || || | |||| ||| | || ||||||| Sbjct 6308931 CGCAGGAAAAGAACGGCACACCTGCTTCTCCAGCCACCGCTCTGGCCAAGAGTGTCTTAC 6308872 Query 16240 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 16299 | ||||| ||| || | || | ||| |||||||| || || | | || Sbjct 6308871 CAGTACCAGGCGGTCCAACAAGCAAACACCCTTTAGGAATCTTAGCACCCAATGCTGTGT 6308812 Query 16300 ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAA-TTCATCTTTG 16349 | | || || | ||| | ||| ||||||| |||| ||| | || ||||| Sbjct 6308811 ACTTATCTGGATTCTTCAAAAAGTCCACAACTTCTTGCAACTCCAACTTTG 6308761 >seq9 Length=11574597 Score = 95.1 bits (104), Expect = 2e-14 Identities = 194/281 (69%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 |||||||||||||| ||||||||||| ||||| || ||||| | |||||||| | | Sbjct 1961723 AAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--AC 1961780 Query 16035 ATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | || |||||| | | |||| | || || |||||||||||||| || || || || | Sbjct 1961781 CTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATAC 1961840 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 16148 | || |||||| || || ||||| | ||||| || || || | || || ||| Sbjct 1961841 AAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGACGCACCAACA 1961896 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 ||||| || | ||| || || | | || | ||| || ||| || || | ||| Sbjct 1961897 CCAACGAAAAGCTCAACGAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCT 1961956 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || || || ||||| ||||| || || Sbjct 1961957 CCGGCCACCGCTCTAGCCAGCAGCGTCTTCCCCGTCCCCGG 1961997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737449579360