Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq570 105 8e-18 seq9 96.9 4e-15 seq365 89.7 6e-13 >seq2 Length=11923138 Score = 127 bits (140), Expect = 2e-24 Identities = 286/425 (67%), Gaps = 11/425 (3%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | ||| || || || | || | |||||| || | | || || Sbjct 5955713 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAATACCAGTGTTACCTTCGAAT 5955654 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | || || || | ||| ||||| | ||||||||| || | Sbjct 5955653 CCATCCATCTCAGTTAGCAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC---A 5955597 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| || | | | |||| | || || |||||||| ||||| | |||||||| || Sbjct 5955596 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAA 5955537 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||||| ||| | | || |||||||| || || ||| || ||||| ||| Sbjct 5955536 GGAGCGTTTTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTGGAGGCACCAACACCGACA 5955477 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | || | || ||| || ||| || |||||| || Sbjct 5955476 AACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAGC 5955418 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||||||| || | ||| || || || ||||| || ||| |||||| |||| Sbjct 5955417 AATGGCTTTCGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATGAGGAGAACACCTTT 5955358 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 || ||| |||| ||| || | ||||||| || | ||| ||||| ||||||| | Sbjct 5955357 CGGGATCCTGGCACCAACCGCAGTGAATCTCTCTGGCTTCTTCAGAAACTCCACAA---C 5955301 Query 9641 TTCCA 9645 ||||| Sbjct 5955300 TTCCA 5955296 >seq570 Length=12873599 Score = 105 bits (116), Expect = 8e-18 Identities = 257/381 (67%), Gaps = 9/381 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| | |||||||| || ||||||| |||||||| || Sbjct 6309137 AAACCCATCCATCTCAGTCAACAACTGGTTAATCGTCTGTTCCCTCTCATCATTTCCT-- 6309080 Query 9341 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | || |||||| | | ||| |||| || || ||||||||||||||||| ||||| Sbjct 6309079 CCTCCCATACCAGCTCCTCTCTGCCTTCCAACAGCGTCAATCTCATCAATGAACACAATG 6309020 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | || | || || | ||| | ||| || || || ||||| Sbjct 6309019 CAAGG-CGCTTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGACGCACCAACACC 6308961 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||| | ||||||||| | | || | || | ||| || ||| | ||| || Sbjct 6308960 CACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAAAAGAACGGCACACCTGCTTCTCC 6308901 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || | |||| ||| | || |||||||| ||||| ||| || | || | |||| Sbjct 6308900 AGCCACCGCTCTGGCCAAGAGTGTCTTACCAGTACCAGGCGGTCCAACAAGCA-AACACC 6308842 Query 9578 CCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 | | |||||||| || || | | ||| | || || | ||| | ||| ||||||| Sbjct 6308841 CTTTAGGAATCTTAGCACCCAATGCTGTGTACTTATCTGGATTCTTCAAAAAGTCCACAA 6308782 Query 9637 TCTCTTCCAA-TTCATCTTTG 9656 |||| ||| | || ||||| Sbjct 6308781 CTTCTTGCAACTCCAACTTTG 6308761 >seq9 Length=11574597 Score = 96.9 bits (106), Expect = 4e-15 Identities = 191/279 (68%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 |||||||||||||| |||||||| || ||||| || ||||| | |||||||| | | Sbjct 1961723 AAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--AC 1961780 Query 9342 ATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | || |||||| | | |||| | || || |||||||||||||| || || ||||||| Sbjct 1961781 CTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATAC 1961840 Query 9400 ATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 | || |||||| || | ||||| | ||| | ||| || || || ||||| Sbjct 1961841 AAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCAACACC 1961898 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||| || | ||| || || | | || | ||| || ||| || || | ||| || Sbjct 1961899 AACGAAAAGCTCAACGAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTCC 1961958 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || | |||| || || || ||||| ||||| || || Sbjct 1961959 GGCCACCGCTCTAGCCAGCAGCGTCTTCCCCGTCCCCGG 1961997 >seq365 Length=14695327 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || ||||| || || | || || |||||| || || ||||||||||| || ||| Sbjct 6186151 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAATCCAGGCATGAGACCACGTTTC 6186092 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| |||| | |||||| ||||||||||||||||| || || || || || Sbjct 6186091 TTAAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 6186032 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || | | ||||| ||||| | |||| | ||| | ||| |||| ||||| | Sbjct 6186031 GCGACGATTCGCTCTGCGAAAGTCTGAGA---TCCGTCGATCCACGTCATCGCCCACTGA 6185975 Query 117472 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 || |||||| | | || || | |||| ||| || Sbjct 6185974 GCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGC 6185940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589976094903120