Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq426 111 1e-19 seq72 95.1 8e-15 seq154 91.5 1e-13 seq98 91.5 1e-13 seq300 84.2 1e-11 >seq426 Length=14042796 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||||||||| || || | ||| | || |||| || Sbjct 4567112 AACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGTGTGCGACCATCCTC 4567171 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| || || || || || |||||||| | || | || |||||||| Sbjct 4567172 AAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTG 4567231 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | || | ||| | ||| || |||| ||| || || || Sbjct 4567232 GATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCGAGGGTAATTGTCTT 4567291 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| ||||| ||||||||||||||||||||| Sbjct 4567292 TCCGGTGAGTGTCTTCACAAAGATCTGCATA 4567322 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| || || | | | | || |||| ||| Sbjct 4568253 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCATCTTCC 4568312 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || | |||||| || | || | |||||||| || | Sbjct 4568313 AGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGTGGGATTCCCTCCTTATCCTGA 4568372 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||| ||| | |||| || | || || || | ||| || || ||| Sbjct 4568373 ATCTTTGCTTTAACGTTATCGATCGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTCTTT 4568432 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||||||||| || ||||||||||| Sbjct 4568433 CCGGTGAGAGTCTTAACGAAGATCTGCAT 4568461 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| |||| || || |||||||| || || || | | | | || |||| Sbjct 4567565 CAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCTGCCAAGGTACGACCATC 4567624 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| |||||||| || || | | |||||||| | || | || ||||| || Sbjct 4567625 CTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTATC 4567684 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| |||||| | || | ||| | ||||| |||| ||| || || Sbjct 4567685 CTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCAACCTCGAGGGTAATTGT 4567744 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||||||||| |||||||||||| Sbjct 4567745 CTTGCCGGTAAGAGTCTTCACGAAGATCTGCATA 4567778 >seq72 Length=2765197 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || ||||||||||||||||| ||| Sbjct 416019 TCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCCGTCTTCCAGCTGTTTTCCGGCGAAT 416078 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| |||||||| | || | || |||||||| |||||| ||| || || Sbjct 416079 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCAC--AT 416136 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | || || || | |||||| || || ||||| || || || Sbjct 416137 --TGTCGATGGTGTCTGACGATTCGACCTCAAGGGTTATTGTCTTCCCCGTTAGGGTTTT 416194 Query 34967 CACAAAGATCTGCATATT 34984 ||||||||||||||| || Sbjct 416195 CACAAAGATCTGCATCTT 416212 >seq154 Length=17905225 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||||||||| || || | | | | || |||| || Sbjct 1925430 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGACCATCCTCA 1925489 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || || |||||||| | || | || |||||||| Sbjct 1925490 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 1925549 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || | |||||| || | || || || || Sbjct 1925550 ATCTTGGCCTTCACGTTGTCGATGGTATCGGAGCTCTCAACCTCCAGTGTGATTGTCTTG 1925609 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || |||||||||||||||||||||||| Sbjct 1925610 CCGGTAAGAGTCTTCACAAAGATCTGCATA 1925639 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||||||||| || || | | | || |||| || Sbjct 1938696 ACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGACCATCCTCA 1938755 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || || ||||| ||| | || | || |||||||| Sbjct 1938756 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGG 1938815 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | ||| | ||| || || | ||| || || || Sbjct 1938816 ATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATTGTCTTG 1938875 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || |||||||||||||||||||| |||||| Sbjct 1938876 CCGGTGAGAGTCTTCACAAAGATTTGCATA 1938905 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||||||||||| ||| || ||||| || || || || | | | | ||| |||| Sbjct 1938920 CAAAACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATC 1938979 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || ||||| || || | | ||||||||| | || | || |||||||| Sbjct 1938980 CTCAAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATACCTTCCTTGTC 1939039 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| || ||| ||| | || | ||| | ||| || || | || ||||| Sbjct 1939040 TTGAATTTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCGACCTCCAAAGTGATGGT 1939099 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||| || | ||| ||||| ||||| |||||| Sbjct 1939100 TTTTCCGGTCAAAGTTTTCACGAAGATTTGCATA 1939133 >seq98 Length=1871237 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | ||| | ||| | || || ||||| || ||||| || Sbjct 1506703 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAA 1506644 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||| |||||||| | || | || |||||||| ||||| ||||| Sbjct 1506643 GATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 1506584 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || || ||| || |||| ||| || || || ||||| || || ||||| Sbjct 1506583 GTCGATCGTATCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 1506524 Query 34970 AAAGATCTGCATATT 34984 ||||||||||| || Sbjct 1506523 GAAGATCTGCATTTT 1506509 >seq300 Length=15655920 Score = 84.2 bits (92), Expect = 1e-11 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| |||| | | ||||||||||| || ||| ||||| ||||| || |||| Sbjct 7117908 TCCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGC 7117967 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | | | || |||| || |||||||| || || ||||| ||||| || |||| Sbjct 7117968 CAGTGTCCTCCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGG 7118027 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCT 34929 | || |||||||| |||||| || || || | ||||| | ||| | | Sbjct 7118028 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCAC--AT--TGTCGATCGTATCCGATGATT 7118083 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| || | ||||| || || ||||| || || ||||| || |||||||| || Sbjct 7118084 CAACCTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTT 7118138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631075770864