Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq33 114 1e-20 seq1 105 8e-18 >seq33 Length=9343251 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || | || |||||| ||||||||| Sbjct 5836448 CCTCCTTGATCGACATAGCGAGCAGTATCATTGAATACACGTAGCATTGGAACAATACCA 5836507 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| ||||||||| | || | || || || |||| Sbjct 5836508 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTGGCACGGATGTTGTGAACTGAA 5836567 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| || | ||||||| ||| | |||||||| ||| Sbjct 5836568 ACACCAATACCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAATGTATCATATATT 5836627 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || |||||||| |||| Sbjct 5836628 CCTTCAATGCTATCATCCTTCAT 5836650 >seq1 Length=21755756 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | || |||| || | || | || |||||| ||||||||| Sbjct 437883 CCTCCTTGATCGACATAGCGAGCGGTATCATTGAATACACGTAGCATTGGAACAATACCA 437824 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| ||||||||| | || | || || || |||| Sbjct 437823 TTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGAA 437764 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| || | ||||||| ||| | |||||||| ||| Sbjct 437763 ACACCAATACCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAATGTATCATATATT 437704 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || |||||||| |||| Sbjct 437703 CCCTCAATGCTATCATCCTTCAT 437681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104317182320