Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq365 86.0 7e-12 >seq365 Length=14695327 Score = 86.0 bits (94), Expect = 7e-12 Identities = 244/371 (66%), Gaps = 7/371 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || || ||||| || ||||| ||||| |||| | ||||| || || || ||||||||| Sbjct 6186172 CACGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAT 6186113 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAAGAA 37294 || ||||| | ||| | ||| |||| ||| || || | ||| ||| | || || ||||| Sbjct 6186112 CCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATCG-AGCAGAAGCTACCGGAGAAGAA 6186054 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAG- 37353 |||||||| || || || || || | || ||||||| || ||| | Sbjct 6186053 GATACCTTCGACGCAGGCGAAAGCGACGATTCGCTCTGCGAAAGT----CTGAGATCCGT 6185998 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 ||||| | | | ||| | || || || || || ||||| ||||| Sbjct 6185997 CGATCCACGTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGC 6185938 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 |||||| || | | |||| | || | || || || || | || | ||| |||| Sbjct 6185937 GGAAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTACGTGTCGAGGAGGAGACTGTACA 6185878 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 | || ||||| ||||| ||||| || ||||| ||||| || ||| | || || || | Sbjct 6185877 TCTCCGAGTGGATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGA 6185818 Query 37534 ATTGAACATCG 37544 ||| |||||| Sbjct 6185817 CTTGGACATCG 6185807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592312076273520