Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq426 102 6e-17 seq154 87.8 1e-12 seq300 86.0 5e-12 >seq426 Length=14042796 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||| ||||| |||||||||| ||| | ||| | || || Sbjct 4567797 ACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGCTAGTGTACGACCATCCTCG 4567856 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| |||| | || || |||| || | ||||||||||| Sbjct 4567857 AGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGG 4567916 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | || || || ||| ||||||| || || |||||| Sbjct 4567917 ATCTTAGCCTTAACGTTGTCAATAGTGTCCGAACTCTCGACCTCCAAAGTGATGGTTTTT 4567976 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||||||||| || || |||||||| Sbjct 4567977 CCAGTCAAAGTTTTAACGAAGATCTGCAT 4568005 >seq154 Length=17905225 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| || || ||||||||||| | | | ||| Sbjct 1925649 AGACGCAAGACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGA 1925708 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || |||| | ||| || |||| ||| | || ||| Sbjct 1925709 CCATCCTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATACCTTCC 1925768 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| || | | | || || ||| ||||||| ||| Sbjct 1925769 TTGTCTTGAATTTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCAACCTCCAAAGTA 1925828 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||||||||| || || || ||||| Sbjct 1925829 ATGGTCTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 1925866 >seq300 Length=15655920 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || ||||| || || || || |||||||| | Sbjct 7117909 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCC 7117968 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | |||| ||||| ||||| ||||| || ||||||||||| ||||||| || Sbjct 7117969 AGTGTCCTCCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGGG 7118028 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||| || ||| | | | || || | || ||| Sbjct 7118029 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTATCCGATGATTCAACC 7118088 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || ||||| || ||||| | ||||| || ||||||||||| Sbjct 7118089 TCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 7118135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934637972074