Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq365 179 7e-40 >seq365 Length=14695327 Score = 179 bits (198), Expect = 7e-40 Identities = 432/647 (67%), Gaps = 10/647 (2%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| ||||| || | || ||| ||| ||||| ||| | | | Sbjct 6186260 AAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATCGACTTCACGCGCTCCTCCGTGAG 6186201 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | || | || |||| | ||| || || || | ||| ||||||||||| Sbjct 6186200 CTTCGTCCTCAACAGAGTG---TAGATGAGGCACGCGAAATCGCAGTGTAAGCCTTCGTC 6186144 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || ||| | | ||||||||||| | |||||||||| || | | || ||||| Sbjct 6186143 TCGAGAGATCAACTCGTTGGAGAAGGTTAATCCAGGCATGAGACCACGTTTCTTAAGCCA 6186084 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 |||||| | ||| || ||||||||||| || || || ||||| ||| || Sbjct 6186083 GAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAAGCGACGAT 6186024 Query 48280 CCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 | |||| |||||| | | || ||| |||||| | | |||||| | || |||| Sbjct 6186023 TCGCTCTGCGAAAGTCTGAGATCC-GTC---GATCCACGTCATCGCCCACTGAGCTTTCT 6185968 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCG 48398 || || ||| || || || || || || |||||||| | | | ||| |||| Sbjct 6185967 TCGCGACGCAAGGGATGGTTTCGATTGCGCGGAAGAGATGGTCTCTCTCTTTGTTGTCCT 6185908 Query 48399 CAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCT 48458 | || || ||| || ||||||||| ||||| | |||||| || ||||||| Sbjct 6185907 TGATGTACGTGTCGAGGAGGAGACTGTACATCTCCGAGTGGATATTCTCAATCGCGATCT 6185848 Query 48459 GGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC- 48517 |||| |||||||| || | ||||| | || || || || | ||||| ||| Sbjct 6185847 GGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGGACATCGGACATGAATC-GGGAAGCG 6185789 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 |||||||| ||| || || ||||| || || |||||||| ||||| ||||| | ||| Sbjct 6185788 AGATTCTCTAGGACGATTCCGTCTGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAG 6185729 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 || |||||| || | ||||| | |||| | | |||||| || || |||||| Sbjct 6185728 TGTCGCTCGCCGTCGTTGAGATTCTCCCAGTCGCGACCGTCTTGTGATAGATCGACTTCT 6185669 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 ||| | |||||||| || || || || |||||||| |||| || Sbjct 6185668 TCCGCCGTCCAGAACGATGCCTCGGCCTTCTTGTACATCTCCCAGAT 6185622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931525371025920