Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq365 102 2e-16 >seq365 Length=14695327 Score = 102 bits (112), Expect = 2e-16 Identities = 375/574 (65%), Gaps = 19/574 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | || |||||| || ||||| | ||||| Sbjct 6185622 ATCTGGGAGATGTACAAGAAGGCCGAGGCATCGTTCTGGACGGCGGAAGAAGTCGATCTA 6185681 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | ||| || |||| | ||| | | | ||||| || || |||| || Sbjct 6185682 TCACAAGACGGTCGCGACTGGGAGAATCTCAACGACGGCGAGCGACACTTCATCAAACAC 6185741 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| || || || || |||||||| ||||| Sbjct 6185742 GTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTCCTAGAGAATCTCGCTTCCCGATTC 6185801 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATCGA 25715 | || || || | |||||| ||| |||||||||||||||||| || || || Sbjct 6185802 ATGTCCGATGTCCAAGTCTCGGAGGCGC-GTGCTTTCTACGGTTTCCAGATCGCGATTGA 6185860 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGC 25772 ||| | ||||| ||| |||| || || || | |||||||| | ||| | Sbjct 6185861 GAATATCCACTCGGAGATGTA---CAGTCTCCTCCTCGACACGTACATCAAGGACAACAA 6185917 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 |||||||| | || || | || ||||| ||| || || || || ||| || | Sbjct 6185918 AGAGAGAGACCATCTCTTCCGCGCAATCGAAACCATCCCTTGCGTCGCGAAGAAAGCTCA 6185977 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGC-TACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||| |||| ||||||| | | || | | || || | ||||| | || || | Sbjct 6185978 GTGGGCGATGACGTGGATC----GACGGATCTCAGACTTTCGCAGAGCGAATCGTCGCTT 6186033 Query 25892 TTG-CTGCTGTGGAGGGCATCTTTTTCAGCGGT-TCGTTTGCGGCCATCTTCTGGCTCAA 25949 | | |||| || || || ||||| ||| |||| | | ||| | || |||||||| || Sbjct 6186034 TCGCCTGC-GTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGC-TCGATTTTCTGGCTTAA 6186091 Query 25950 GCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | | | | || | |||||| || | ||| ||||||||| | ||| | ||||| | Sbjct 6186092 G-AAACGTGGTCTCATGCCTGGATTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAAG 6186150 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 | | ||| | ||||| || ||||| ||||||| Sbjct 6186151 GCTTACACTGCGATTTCGCGTGCCTCATCTACAC 6186184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928837392462720